arvados.git
2 years ago17755: Merge branch 'main' into 17755-add-singularity-to-compute-image
Ward Vandewege [Fri, 3 Sep 2021 14:03:20 +0000 (10:03 -0400)]
17755: Merge branch 'main' into 17755-add-singularity-to-compute-image

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>

2 years agoMerge branch '18076-stale-cached-users-handling' into main. Closes #18076
Lucas Di Pentima [Thu, 2 Sep 2021 20:07:28 +0000 (17:07 -0300)]
Merge branch '18076-stale-cached-users-handling' into main. Closes #18076

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas.dipentima@curii.com>

2 years ago18076: Improves test.
Lucas Di Pentima [Thu, 2 Sep 2021 20:06:38 +0000 (17:06 -0300)]
18076: Improves test.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas.dipentima@curii.com>

2 years ago18076: Fixes the bug, expands the test with additional checks.
Lucas Di Pentima [Thu, 2 Sep 2021 18:54:23 +0000 (15:54 -0300)]
18076: Fixes the bug, expands the test with additional checks.

If there's a stale cached user record that's creating the username collision,
set it to nil before retrying the update. There're two scenarios this is
covering:

1. The stale user record belongs to an existing user on LoginCluster. Its
   username was taken by other user so the new username is coming in the
   batch_update operation -- it's ok to temporarily have it set to nil.
2. The stale user record doesn't exist on LoginCluster anymore, so having
   it being reset to nil isn't harmful and avoids future collisions.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas.dipentima@curii.com>

2 years ago18076: Adds test exposing the issue.
Lucas Di Pentima [Wed, 1 Sep 2021 20:41:01 +0000 (17:41 -0300)]
18076: Adds test exposing the issue.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas.dipentima@curii.com>

2 years agoMerge branch '17696-gosdk-default-storage-class' into main. Closes #17696
Lucas Di Pentima [Wed, 1 Sep 2021 20:00:45 +0000 (17:00 -0300)]
Merge branch '17696-gosdk-default-storage-class' into main. Closes #17696

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas.dipentima@curii.com>

2 years agoUpdate test to accept non-empty default BsubArgumentsList.
Tom Clegg [Wed, 1 Sep 2021 13:18:29 +0000 (09:18 -0400)]
Update test to accept non-empty default BsubArgumentsList.

refs #17857

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

2 years agoUpdate default bsub arguments to save stdout/stderr in /tmp.
Tom Clegg [Tue, 31 Aug 2021 20:43:17 +0000 (16:43 -0400)]
Update default bsub arguments to save stdout/stderr in /tmp.

refs #17857

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

2 years agoFix misleading log message.
Tom Clegg [Tue, 31 Aug 2021 20:22:09 +0000 (16:22 -0400)]
Fix misleading log message.

refs #17857

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

2 years ago17696: Updates tests to check for backwards compatibility.
Lucas Di Pentima [Mon, 30 Aug 2021 20:19:11 +0000 (17:19 -0300)]
17696: Updates tests to check for backwards compatibility.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas.dipentima@curii.com>

2 years ago17696: Moves default storage classes loading to keepclient.New().
Lucas Di Pentima [Thu, 26 Aug 2021 21:02:01 +0000 (18:02 -0300)]
17696: Moves default storage classes loading to keepclient.New().

Also adds integration test that proves that a collection and its keepclient
use the same default storage classes list.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas.dipentima@curii.com>

2 years ago17696: Adds default storage classes config loading to KeepClient, with tests.
Lucas Di Pentima [Mon, 23 Aug 2021 16:08:35 +0000 (13:08 -0300)]
17696: Adds default storage classes config loading to KeepClient, with tests.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas.dipentima@curii.com>

2 years ago17696: Adds ArvadosClient.ClusterConfig() to get the exported cluster's config.
Lucas Di Pentima [Fri, 20 Aug 2021 16:09:39 +0000 (13:09 -0300)]
17696: Adds ArvadosClient.ClusterConfig() to get the exported cluster's config.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas.dipentima@curii.com>

2 years agoMerge branch '17217-collection-signatures' into main
Tom Clegg [Mon, 30 Aug 2021 17:29:33 +0000 (13:29 -0400)]
Merge branch '17217-collection-signatures' into main

closes #17217

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

2 years agoMerge branch '17994-filter-by-storage-classes' into main
Tom Clegg [Mon, 30 Aug 2021 17:27:03 +0000 (13:27 -0400)]
Merge branch '17994-filter-by-storage-classes' into main

closes #17994

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

2 years agoFix whitespace.
Ward Vandewege [Mon, 30 Aug 2021 14:59:33 +0000 (10:59 -0400)]
Fix whitespace.

No issue #

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>

2 years ago17217: Sign locators in CollectionCreate and Update.
Tom Clegg [Mon, 30 Aug 2021 14:07:33 +0000 (10:07 -0400)]
17217: Sign locators in CollectionCreate and Update.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

2 years ago17217: Update RailsAPI tests to not expect signatures.
Tom Clegg [Thu, 26 Aug 2021 20:02:10 +0000 (16:02 -0400)]
17217: Update RailsAPI tests to not expect signatures.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

2 years ago17217: Test signature expiry times.
Tom Clegg [Thu, 26 Aug 2021 18:36:18 +0000 (14:36 -0400)]
17217: Test signature expiry times.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

2 years ago17217: Skip signatures when BlobSigning=false.
Tom Clegg [Thu, 26 Aug 2021 04:10:52 +0000 (00:10 -0400)]
17217: Skip signatures when BlobSigning=false.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

2 years agoMerge branch '17696-pysdk-default-storage-class' into main. Refs #17696
Lucas Di Pentima [Fri, 27 Aug 2021 15:22:47 +0000 (12:22 -0300)]
Merge branch '17696-pysdk-default-storage-class' into main. Refs #17696

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas.dipentima@curii.com>

2 years ago17994: Document new filtering capabilities.
Tom Clegg [Fri, 27 Aug 2021 15:18:08 +0000 (11:18 -0400)]
17994: Document new filtering capabilities.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

2 years agoNeed to match the regex again
Peter Amstutz [Thu, 26 Aug 2021 22:45:56 +0000 (18:45 -0400)]
Need to match the regex again

no issue #

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

2 years agoMerge branch '15159-export-trustallcontent' into main. Closes #15159
Stephen Smith [Thu, 26 Aug 2021 16:52:20 +0000 (12:52 -0400)]
Merge branch '15159-export-trustallcontent' into main. Closes #15159

Arvados-DCO-1.1-Signed-off-by: Stephen Smith <stephen@curii.com>

2 years ago17696: Updates API documentation adding storage_classes_* fields.
Lucas Di Pentima [Thu, 19 Aug 2021 22:27:12 +0000 (19:27 -0300)]
17696: Updates API documentation adding storage_classes_* fields.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas.dipentima@curii.com>

2 years ago17696: Updates docstring on arvados.Collection class.
Lucas Di Pentima [Thu, 19 Aug 2021 21:29:19 +0000 (18:29 -0300)]
17696: Updates docstring on arvados.Collection class.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas.dipentima@curii.com>

2 years ago17696: KeepClient uses default storage classes when none is required explicitly
Lucas Di Pentima [Thu, 19 Aug 2021 21:08:39 +0000 (18:08 -0300)]
17696: KeepClient uses default storage classes when none is required explicitly

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas.dipentima@curii.com>

2 years ago17217: Add signatures test for groups/contents.
Tom Clegg [Thu, 26 Aug 2021 04:04:30 +0000 (00:04 -0400)]
17217: Add signatures test for groups/contents.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

2 years ago17217: Update tests, remove unused code.
Tom Clegg [Thu, 26 Aug 2021 04:04:26 +0000 (00:04 -0400)]
17217: Update tests, remove unused code.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

2 years ago17217: Remove crufty test util funcs.
Tom Clegg [Tue, 24 Aug 2021 20:07:43 +0000 (16:07 -0400)]
17217: Remove crufty test util funcs.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

2 years ago17217: Sign manifests in controller instead of RailsAPI.
Tom Clegg [Tue, 24 Aug 2021 20:07:34 +0000 (16:07 -0400)]
17217: Sign manifests in controller instead of RailsAPI.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

2 years agoMerge branch '17755-singularity-race' into main refs #17755
Peter Amstutz [Wed, 25 Aug 2021 19:34:04 +0000 (15:34 -0400)]
Merge branch '17755-singularity-race' into main refs #17755

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

2 years ago17755: Fix os.Stat
Peter Amstutz [Wed, 25 Aug 2021 17:01:45 +0000 (13:01 -0400)]
17755: Fix os.Stat

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

2 years ago17755: Add ensure_unique_name to avoid collisions on creating cache collection
Peter Amstutz [Tue, 24 Aug 2021 20:46:21 +0000 (16:46 -0400)]
17755: Add ensure_unique_name to avoid collisions on creating cache collection

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

2 years agoMerge branch '17948-test-collection-tool' into main. Closes #17948
Lucas Di Pentima [Tue, 24 Aug 2021 20:18:19 +0000 (17:18 -0300)]
Merge branch '17948-test-collection-tool' into main. Closes #17948

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas.dipentima@curii.com>

2 years agoarvbox ensures workbench2 development server doesn't run with HTTPS
Peter Amstutz [Tue, 24 Aug 2021 17:51:12 +0000 (13:51 -0400)]
arvbox ensures workbench2 development server doesn't run with HTTPS

This is because it is already proxied through nginx, which is set up
with the correct certificates.

Also install 'vim-tiny' to have a way to edit files inside the container.

no issue #

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

2 years agoMerge branch '18004-cached-token-race-condition' into main. Closes #18004
Lucas Di Pentima [Tue, 24 Aug 2021 15:31:11 +0000 (12:31 -0300)]
Merge branch '18004-cached-token-race-condition' into main. Closes #18004

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas.dipentima@curii.com>

2 years ago17994: Update comment.
Tom Clegg [Tue, 24 Aug 2021 13:57:10 +0000 (09:57 -0400)]
17994: Update comment.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

2 years ago17994: Support filtering by element/key presence in jsonb columns.
Tom Clegg [Tue, 24 Aug 2021 13:47:04 +0000 (09:47 -0400)]
17994: Support filtering by element/key presence in jsonb columns.

Remove storage_classes_* from searchable_columns so that filters with
the magic attr "any" don't try to search them.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

2 years agoMerge branch '15430-fts-operator-removal' into main. Closes #15430
Lucas Di Pentima [Mon, 23 Aug 2021 21:47:29 +0000 (18:47 -0300)]
Merge branch '15430-fts-operator-removal' into main. Closes #15430

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas.dipentima@curii.com>

2 years ago15430: Improves upgrade notes.
Lucas Di Pentima [Mon, 23 Aug 2021 21:37:12 +0000 (18:37 -0300)]
15430: Improves upgrade notes.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas.dipentima@curii.com>

2 years agoMerge branch '17698-keepstore-concurrent-writes'
Tom Clegg [Mon, 23 Aug 2021 18:22:35 +0000 (14:22 -0400)]
Merge branch '17698-keepstore-concurrent-writes'

closes #17698

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

2 years ago17994: Allow filtering on storage_classes_desired/confirmed fields.
Tom Clegg [Mon, 23 Aug 2021 18:21:36 +0000 (14:21 -0400)]
17994: Allow filtering on storage_classes_desired/confirmed fields.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

2 years ago17698: Merge branch 'main' into 17698-keepstore-concurrent-writes
Tom Clegg [Mon, 23 Aug 2021 17:45:06 +0000 (13:45 -0400)]
17698: Merge branch 'main' into 17698-keepstore-concurrent-writes

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

2 years ago17698: Test "no writable volumes" case.
Tom Clegg [Mon, 23 Aug 2021 14:28:17 +0000 (10:28 -0400)]
17698: Test "no writable volumes" case.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

2 years ago17698: Add comment to clarify locking.
Tom Clegg [Mon, 23 Aug 2021 14:01:40 +0000 (10:01 -0400)]
17698: Add comment to clarify locking.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

2 years ago17698: Update PutBlock comment.
Tom Clegg [Mon, 23 Aug 2021 14:01:32 +0000 (10:01 -0400)]
17698: Update PutBlock comment.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

2 years ago17698: Rename newPutResult to match new putProgress type name.
Tom Clegg [Mon, 23 Aug 2021 14:00:50 +0000 (10:00 -0400)]
17698: Rename newPutResult to match new putProgress type name.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

2 years ago17698: Fix AllWritable panic when no volumes are writable.
Tom Clegg [Mon, 23 Aug 2021 14:00:01 +0000 (10:00 -0400)]
17698: Fix AllWritable panic when no volumes are writable.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

2 years agoMerge branch '17535-test-provision-jenkins'
Javier Bértoli [Fri, 20 Aug 2021 00:57:19 +0000 (21:57 -0300)]
Merge branch '17535-test-provision-jenkins'

closes #17535
Arvados-DCO-1.1-Signed-off-by: Javier Bértoli <jbertoli@curii.com>

2 years ago17755: Merge branch 'main' into 17755-add-singularity-to-compute-image
Ward Vandewege [Tue, 17 Aug 2021 20:12:10 +0000 (16:12 -0400)]
17755: Merge branch 'main' into 17755-add-singularity-to-compute-image

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>

2 years ago18004: Fixes a couple of race condition bugs related to caching remote users.
Lucas Di Pentima [Tue, 17 Aug 2021 18:20:59 +0000 (15:20 -0300)]
18004: Fixes a couple of race condition bugs related to caching remote users.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas.dipentima@curii.com>

2 years agoMerge branch '17983-fuse-unlock-relock' into main refs #17983
Peter Amstutz [Tue, 17 Aug 2021 15:08:11 +0000 (11:08 -0400)]
Merge branch '17983-fuse-unlock-relock' into main refs #17983

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

2 years ago17948: Adds info to error messaging.
Lucas Di Pentima [Thu, 12 Aug 2021 14:01:52 +0000 (11:01 -0300)]
17948: Adds info to error messaging.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas.dipentima@curii.com>

2 years ago17948: Adds arguments to allow specifying how many subdirs to create.
Lucas Di Pentima [Tue, 10 Aug 2021 20:05:54 +0000 (17:05 -0300)]
17948: Adds arguments to allow specifying how many subdirs to create.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas.dipentima@curii.com>

2 years ago17948: Splits adjectives & nouns list into multiple lines.
Lucas Di Pentima [Tue, 10 Aug 2021 19:22:54 +0000 (16:22 -0300)]
17948: Splits adjectives & nouns list into multiple lines.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas.dipentima@curii.com>

2 years ago17948: Fixes conditional.
Lucas Di Pentima [Fri, 6 Aug 2021 20:26:10 +0000 (17:26 -0300)]
17948: Fixes conditional.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas.dipentima@curii.com>

2 years ago17948: Optimizes tool to stop adding data to a big enough manifest.
Lucas Di Pentima [Fri, 6 Aug 2021 19:55:16 +0000 (16:55 -0300)]
17948: Optimizes tool to stop adding data to a big enough manifest.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas.dipentima@curii.com>

2 years ago17948: First working implementation (WIP)
Lucas Di Pentima [Thu, 5 Aug 2021 14:42:09 +0000 (11:42 -0300)]
17948: First working implementation (WIP)

There're some issues: RailsAPI's full text search index on collections
returns an error when creating collection with >~36k files. Also, PySDK
is returning a socket read timeout error, seemilngly disregarding the
'timeout' setting on the arvados.api() object.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas.dipentima@curii.com>

2 years ago15430: Adds an upgrade note warning that @@ won't work anymore.
Lucas Di Pentima [Mon, 16 Aug 2021 20:09:24 +0000 (17:09 -0300)]
15430: Adds an upgrade note warning that @@ won't work anymore.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas.dipentima@curii.com>

2 years ago15430: Drops FTS indexes, removes unneeded test.
Lucas Di Pentima [Mon, 16 Aug 2021 19:44:49 +0000 (16:44 -0300)]
15430: Drops FTS indexes, removes unneeded test.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas.dipentima@curii.com>

2 years ago17983: Fix writable fuse deadlock
Peter Amstutz [Mon, 16 Aug 2021 19:33:10 +0000 (15:33 -0400)]
17983: Fix writable fuse deadlock

Resulting from threads competing for llfuse.lock and collection lock
and one code path locking in the wrong order.

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

2 years ago15430: Fixes updated wb1 test that was migrated from using '@@' to 'ilike'.
Lucas Di Pentima [Mon, 16 Aug 2021 18:31:56 +0000 (15:31 -0300)]
15430: Fixes updated wb1 test that was migrated from using '@@' to 'ilike'.

It seems that the ordering isn't the same when using both operators as one
pipeline instance object wasn't getting listed after migration. Had to both
change the created_at and uuid fields to make it appear on the all_processes
page when passing 'ilike'.

This shouldn't be a problem, as we're actually using 'ilike' on the real wb1
page, it was just the test what was outdated.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas.dipentima@curii.com>

2 years ago15430: Updates wb1 test so that it exercises the ilike operator instead of @@
Lucas Di Pentima [Thu, 12 Aug 2021 15:50:55 +0000 (12:50 -0300)]
15430: Updates wb1 test so that it exercises the ilike operator instead of @@

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas.dipentima@curii.com>

2 years ago15430: Removes support for the '@@' full text search operator.
Lucas Di Pentima [Thu, 12 Aug 2021 15:03:30 +0000 (12:03 -0300)]
15430: Removes support for the '@@' full text search operator.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas.dipentima@curii.com>

2 years ago15159: Export TrustAllContent for use in wb2
Stephen Smith [Mon, 16 Aug 2021 18:52:54 +0000 (14:52 -0400)]
15159: Export TrustAllContent for use in wb2

Arvados-DCO-1.1-Signed-off-by: Stephen Smith <stephen@curii.com>

2 years agoMerge branch '18001-add-UserNotifierEmailBcc'
Ward Vandewege [Fri, 13 Aug 2021 19:35:05 +0000 (15:35 -0400)]
Merge branch '18001-add-UserNotifierEmailBcc'

closes #18001

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>

2 years ago18001: Merge branch 'main' into 18001-add-UserNotifierEmailBcc
Ward Vandewege [Fri, 13 Aug 2021 19:33:46 +0000 (15:33 -0400)]
18001: Merge branch 'main' into 18001-add-UserNotifierEmailBcc

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>

2 years ago18001: address review comments.
Ward Vandewege [Fri, 13 Aug 2021 19:33:17 +0000 (15:33 -0400)]
18001: address review comments.

No issue #

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>

2 years agoMerge branch '17390-cwl-storage-classes' into main
Peter Amstutz [Fri, 13 Aug 2021 18:21:57 +0000 (14:21 -0400)]
Merge branch '17390-cwl-storage-classes' into main

refs #17390

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

2 years ago17390: Document arv:OutputStorageClass extension
Peter Amstutz [Fri, 13 Aug 2021 18:11:33 +0000 (14:11 -0400)]
17390: Document arv:OutputStorageClass extension

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

2 years ago17698: Do concurrent writes when multiple volumes are needed.
Tom Clegg [Fri, 13 Aug 2021 15:06:34 +0000 (11:06 -0400)]
17698: Do concurrent writes when multiple volumes are needed.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

2 years ago17390: Update arvados-cwl-runner docs
Peter Amstutz [Fri, 13 Aug 2021 14:33:34 +0000 (10:33 -0400)]
17390: Update arvados-cwl-runner docs

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

2 years ago17390: Add unit tests for storage classes
Peter Amstutz [Thu, 12 Aug 2021 19:24:14 +0000 (15:24 -0400)]
17390: Add unit tests for storage classes

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

2 years ago17390: Use cluster-configured default
Peter Amstutz [Tue, 10 Aug 2021 20:59:21 +0000 (16:59 -0400)]
17390: Use cluster-configured default

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

2 years ago17390: setting intermediate/final storage classes WIP
Peter Amstutz [Tue, 10 Aug 2021 20:54:40 +0000 (16:54 -0400)]
17390: setting intermediate/final storage classes WIP

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

2 years agoMerge branch '17984-cwl-project-uuid-users' into main
Peter Amstutz [Fri, 13 Aug 2021 14:13:54 +0000 (10:13 -0400)]
Merge branch '17984-cwl-project-uuid-users' into main

refs #17984

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

2 years agoMerge branch '18013-token-rake-task-fix'
Ward Vandewege [Thu, 12 Aug 2021 20:22:51 +0000 (16:22 -0400)]
Merge branch '18013-token-rake-task-fix'

closes #18013

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>

2 years ago18013: Merge branch 'main' into 18013-token-rake-task-fix
Ward Vandewege [Thu, 12 Aug 2021 20:22:20 +0000 (16:22 -0400)]
18013: Merge branch 'main' into 18013-token-rake-task-fix

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>

2 years ago18013: address review feedback.
Ward Vandewege [Thu, 12 Aug 2021 20:21:40 +0000 (16:21 -0400)]
18013: address review feedback.

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>

2 years agoMerge branch '17726-singularity-doc' into main
Tom Clegg [Thu, 12 Aug 2021 20:05:59 +0000 (16:05 -0400)]
Merge branch '17726-singularity-doc' into main

closes #17726

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

2 years ago17984: Fix tests
Peter Amstutz [Thu, 12 Aug 2021 19:43:18 +0000 (15:43 -0400)]
17984: Fix tests

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

2 years agoDisable SELinux on Centos-7 platform
Javier Bértoli [Thu, 12 Aug 2021 18:47:55 +0000 (15:47 -0300)]
Disable SELinux on Centos-7 platform

Arvados-DCO-1.1-Signed-off-by: Javier Bértoli <jbertoli@curii.com>

2 years ago18013: the db:check_long_lived_tokens and db:fix_long_lived_tokens rake
Ward Vandewege [Thu, 12 Aug 2021 15:05:52 +0000 (11:05 -0400)]
18013: the db:check_long_lived_tokens and db:fix_long_lived_tokens rake
       tasks now take API.MaxTokenLifetime into account.

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>

2 years agoMerge branch '17947-centos7-package-conflict'
Ward Vandewege [Thu, 12 Aug 2021 13:07:06 +0000 (09:07 -0400)]
Merge branch '17947-centos7-package-conflict'

closes #17947

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>

2 years ago17947: Merge branch 'main' into 17947-centos7-package-conflict
Ward Vandewege [Thu, 12 Aug 2021 13:06:36 +0000 (09:06 -0400)]
17947: Merge branch 'main' into 17947-centos7-package-conflict

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>

2 years ago18004: Adds test exposing the race condition.
Lucas Di Pentima [Tue, 10 Aug 2021 15:15:04 +0000 (12:15 -0300)]
18004: Adds test exposing the race condition.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas.dipentima@curii.com>

2 years agoMerge branch '18005-collection-versioning-regression' into main. Closes #18004
Lucas Di Pentima [Wed, 11 Aug 2021 19:40:59 +0000 (16:40 -0300)]
Merge branch '18005-collection-versioning-regression' into main. Closes #18004

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas.dipentima@curii.com>

2 years ago17947: the Arvados python3-* CentOS packages should conflict with the
Ward Vandewege [Wed, 11 Aug 2021 19:29:07 +0000 (15:29 -0400)]
17947: the Arvados python3-* CentOS packages should conflict with the
       corresponding older rh-python36-* version.

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>

2 years ago18005: Fixes the bug.
Lucas Di Pentima [Wed, 11 Aug 2021 18:37:46 +0000 (15:37 -0300)]
18005: Fixes the bug.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas.dipentima@curii.com>

2 years ago18005: Exposes the bug by simulating a keep-balance run a making a new version.
Lucas Di Pentima [Wed, 11 Aug 2021 18:31:11 +0000 (15:31 -0300)]
18005: Exposes the bug by simulating a keep-balance run a making a new version.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas.dipentima@curii.com>

2 years agoMerge branch '17985-cwltool-binstub'
Ward Vandewege [Wed, 11 Aug 2021 15:20:24 +0000 (11:20 -0400)]
Merge branch '17985-cwltool-binstub'

closes #17985

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>

2 years ago17985: fix binstub for cwltool in our arvados-cwl-runner package.
Ward Vandewege [Wed, 11 Aug 2021 15:19:35 +0000 (11:19 -0400)]
17985: fix binstub for cwltool in our arvados-cwl-runner package.

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>

2 years ago18001: add Users/UserNotifierEmailBcc configuration option, which is the
Ward Vandewege [Tue, 10 Aug 2021 15:00:02 +0000 (11:00 -0400)]
18001: add Users/UserNotifierEmailBcc configuration option, which is the
       e-mail address that will be bcc'd on the new user welcome e-mail.

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <ward@curii.com>

2 years ago17726: Add Singularity info to user docs.
Tom Clegg [Tue, 10 Aug 2021 21:00:45 +0000 (17:00 -0400)]
17726: Add Singularity info to user docs.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

2 years ago17984: Improve error reporting a bit
Peter Amstutz [Tue, 10 Aug 2021 19:44:27 +0000 (15:44 -0400)]
17984: Improve error reporting a bit

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

2 years ago17984: validation accepts user uuid in --project-uuid
Peter Amstutz [Tue, 10 Aug 2021 19:29:45 +0000 (15:29 -0400)]
17984: validation accepts user uuid in --project-uuid

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <peter.amstutz@curii.com>

2 years agoMerge branch '17936-arvput-batch-mode' into main. Closes #17936.
Lucas Di Pentima [Tue, 10 Aug 2021 18:57:21 +0000 (15:57 -0300)]
Merge branch '17936-arvput-batch-mode' into main. Closes #17936.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <lucas.dipentima@curii.com>

2 years agoMerge branch '17967-storage-classes-config' into main
Tom Clegg [Tue, 10 Aug 2021 14:43:25 +0000 (10:43 -0400)]
Merge branch '17967-storage-classes-config' into main

closes #17967

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

2 years agoMake Saltstack fail on first error
Javier Bértoli [Tue, 10 Aug 2021 11:20:31 +0000 (08:20 -0300)]
Make Saltstack fail on first error

no issue #
Arvados-DCO-1.1-Signed-off-by: Javier Bértoli <jbertoli@curii.com>