Tom Clegg [Mon, 15 Apr 2013 02:19:25 +0000 (19:19 -0700)]
rename projects
Tom Clegg [Fri, 12 Apr 2013 23:20:50 +0000 (16:20 -0700)]
add "incomplete" alert boxes
Tom Clegg [Thu, 11 Apr 2013 19:19:01 +0000 (12:19 -0700)]
fix favicon path
Tom Clegg [Thu, 11 Apr 2013 19:15:41 +0000 (12:15 -0700)]
change favicon
Tom Clegg [Thu, 11 Apr 2013 18:06:29 +0000 (11:06 -0700)]
fix doc header alignment some more
Tom Clegg [Thu, 11 Apr 2013 17:53:52 +0000 (10:53 -0700)]
fix doc header alignment some more
Tom Clegg [Thu, 11 Apr 2013 17:49:43 +0000 (10:49 -0700)]
fix doc front page title/text alignment
Tom Clegg [Thu, 11 Apr 2013 16:51:33 +0000 (09:51 -0700)]
fix doc front page subtitle word wrap
Tom Clegg [Thu, 11 Apr 2013 16:41:14 +0000 (09:41 -0700)]
fix doc front page header image
Tom Clegg [Thu, 11 Apr 2013 15:54:55 +0000 (08:54 -0700)]
mobile fix for doc side nav
Tom Clegg [Thu, 11 Apr 2013 06:08:30 +0000 (23:08 -0700)]
tweak page titles, add link to arvados.org
Tom Clegg [Thu, 11 Apr 2013 05:42:43 +0000 (22:42 -0700)]
rework front page
Tom Clegg [Thu, 11 Apr 2013 02:13:30 +0000 (19:13 -0700)]
add api/Collections and unlink missing resources on index page
Tom Clegg [Wed, 10 Apr 2013 21:45:21 +0000 (14:45 -0700)]
rename explorer -> workbench
Tom Clegg [Wed, 10 Apr 2013 20:41:43 +0000 (13:41 -0700)]
fix links, rename orvos
Tom Clegg [Wed, 10 Apr 2013 20:38:14 +0000 (13:38 -0700)]
fix titles of api/Jobs and api/Links pages
Tom Clegg [Wed, 10 Apr 2013 20:34:35 +0000 (13:34 -0700)]
add api/Jobs
Tom Clegg [Wed, 10 Apr 2013 20:30:01 +0000 (13:30 -0700)]
add api/Links
Tom Clegg [Wed, 10 Apr 2013 20:23:39 +0000 (13:23 -0700)]
rename api resources pages
Tom Clegg [Wed, 10 Apr 2013 20:11:12 +0000 (13:11 -0700)]
fix up api index
Tom Clegg [Wed, 10 Apr 2013 20:01:33 +0000 (13:01 -0700)]
xref to list of resources
Tom Clegg [Wed, 10 Apr 2013 19:48:51 +0000 (12:48 -0700)]
tweak front page
Tom Clegg [Wed, 10 Apr 2013 19:36:46 +0000 (12:36 -0700)]
use bootstrap nav-list instead of hacked nav-stacked
Tom Clegg [Wed, 10 Apr 2013 19:09:49 +0000 (12:09 -0700)]
split User into User Guide and API Reference
Tom Clegg [Wed, 10 Apr 2013 18:26:41 +0000 (11:26 -0700)]
fix ssh link
Tom Clegg [Wed, 10 Apr 2013 17:42:07 +0000 (10:42 -0700)]
add Keep vocabulary
Tom Clegg [Wed, 10 Apr 2013 15:57:27 +0000 (08:57 -0700)]
add job pages
Ward Vandewege [Wed, 10 Apr 2013 16:08:34 +0000 (12:08 -0400)]
Merge branch 'explorer'
Ward Vandewege [Wed, 10 Apr 2013 16:08:18 +0000 (12:08 -0400)]
moved explorer into new directory structure
Ward Vandewege [Wed, 10 Apr 2013 15:40:48 +0000 (11:40 -0400)]
Merge branch 'clients'
Ward Vandewege [Wed, 10 Apr 2013 15:40:35 +0000 (11:40 -0400)]
reorganized repo structure
Ward Vandewege [Wed, 10 Apr 2013 15:26:58 +0000 (11:26 -0400)]
moved api server code into new directory structure
Tom Clegg [Wed, 10 Apr 2013 02:07:08 +0000 (19:07 -0700)]
add a bunch of API pages
Tom Clegg [Wed, 10 Apr 2013 01:10:56 +0000 (18:10 -0700)]
highlight active side nav
Tom Clegg [Wed, 10 Apr 2013 00:09:12 +0000 (17:09 -0700)]
use arvados.org favicon
Tom Clegg [Tue, 9 Apr 2013 22:17:13 +0000 (15:17 -0700)]
add provenance, using git, using keep pages
Tom Clegg [Tue, 9 Apr 2013 21:44:00 +0000 (14:44 -0700)]
rename ssh keys -> ssh access
Tom Clegg [Tue, 9 Apr 2013 21:30:46 +0000 (14:30 -0700)]
tweak front page of doc
Tom Clegg [Tue, 9 Apr 2013 21:27:25 +0000 (14:27 -0700)]
add ssh keys page
Tom Clegg [Tue, 9 Apr 2013 20:45:37 +0000 (13:45 -0700)]
fix "active section" style
Tom Clegg [Tue, 9 Apr 2013 19:15:30 +0000 (12:15 -0700)]
add jekyll doc tree
Samuel Shapiro [Fri, 29 Mar 2013 17:32:53 +0000 (13:32 -0400)]
added initial python wh file
Tom Clegg [Wed, 27 Mar 2013 19:26:45 +0000 (12:26 -0700)]
set instance.success when finished. refs #1424
Tom Clegg [Wed, 27 Mar 2013 00:14:59 +0000 (17:14 -0700)]
add --create-only and --instance arguments. refs #1448
Tom Clegg [Wed, 27 Mar 2013 00:43:23 +0000 (17:43 -0700)]
tweak serialized attribute search. refs #1447
Tom Clegg [Tue, 26 Mar 2013 23:39:19 +0000 (16:39 -0700)]
pass component[:script_parameters] to server when searching for jobs. refs #1447
Tom Clegg [Tue, 26 Mar 2013 23:38:07 +0000 (16:38 -0700)]
hack search on serialized fields. refs #1447
Tom Clegg [Tue, 26 Mar 2013 23:37:29 +0000 (16:37 -0700)]
fix crash on non-string job#script_parameters
Tom Clegg [Tue, 26 Mar 2013 23:10:04 +0000 (16:10 -0700)]
pass component[:script_version_descends_from] to server when searching for jobs. refs #1445
Tom Clegg [Tue, 26 Mar 2013 22:47:52 +0000 (15:47 -0700)]
Tweak git commit lookup. refs #1445
Tom Clegg [Tue, 26 Mar 2013 22:24:37 +0000 (15:24 -0700)]
Support searching jobs by script_version_descends_from. refs #1445
Tom Clegg [Mon, 25 Mar 2013 18:51:47 +0000 (11:51 -0700)]
add config.git_repositories_dir. refs #1445
Tom Clegg [Mon, 25 Mar 2013 18:50:53 +0000 (11:50 -0700)]
do not include ApiClient* in discovery document. refs #1405 refs #1406
Tom Clegg [Mon, 25 Mar 2013 21:20:29 +0000 (14:20 -0700)]
show pipeline instance uuid in plain text status. refs #1440
Ward Vandewege [Mon, 25 Mar 2013 21:18:14 +0000 (17:18 -0400)]
Merge branch 'master' of git.clinicalfuture.com:clients
Ward Vandewege [Mon, 25 Mar 2013 21:17:25 +0000 (17:17 -0400)]
Make subcommands singular. Slight layout improvement, too.
Tom Clegg [Mon, 25 Mar 2013 19:59:24 +0000 (12:59 -0700)]
create/update PipelineInstance while working. some code cleanup. refs #1440
Tom Clegg [Mon, 25 Mar 2013 21:13:16 +0000 (14:13 -0700)]
add pipeline_instances#index, fix #show to work with new-school pipelines. refs #1421 refs #1422
Ward Vandewege [Mon, 25 Mar 2013 20:47:36 +0000 (16:47 -0400)]
Fix up the discovery document - make sure we define 'items' in the the
various ObjectList definitions.
Also really fix up the issue with ObjectList vs ObjectsList.
This makes the Python SDK happy.
Ward Vandewege [Mon, 25 Mar 2013 19:50:34 +0000 (15:50 -0400)]
Make sure to pluralized object names in the List method as listed in the
REST discovery document.
This makes the Python SDK happy.
Tom Clegg [Mon, 25 Mar 2013 19:34:46 +0000 (12:34 -0700)]
accept pipeline template uuid in --template argument, improve docs. refs #1424
Tom Clegg [Mon, 25 Mar 2013 19:10:58 +0000 (12:10 -0700)]
rename wh-pipeline to wh-run-pipeline-instance. refs #1424
Tom Clegg [Mon, 25 Mar 2013 18:44:06 +0000 (11:44 -0700)]
tweak generic object display
Tom Clegg [Mon, 25 Mar 2013 18:21:43 +0000 (11:21 -0700)]
add /pipeline_templates index page. refs #1420
Tom Clegg [Mon, 25 Mar 2013 07:24:54 +0000 (00:24 -0700)]
fix rdoc. refs #1424
Tom Clegg [Fri, 22 Mar 2013 21:42:09 +0000 (14:42 -0700)]
add wh-pipeline. refs #1424
Tom Clegg [Fri, 22 Mar 2013 06:50:44 +0000 (23:50 -0700)]
show PGP huID tags. refs #1408 refs #1419
Tom Clegg [Fri, 22 Mar 2013 05:40:41 +0000 (22:40 -0700)]
tweak table border
Tom Clegg [Fri, 22 Mar 2013 04:18:08 +0000 (21:18 -0700)]
add names and keep flags to groups -> collections list. refs #1408
Tom Clegg [Thu, 21 Mar 2013 18:52:00 +0000 (11:52 -0700)]
use label instead of btn for labels on collections#show
Tom Clegg [Thu, 21 Mar 2013 17:14:34 +0000 (10:14 -0700)]
add Collections tab to groups#show page
Tom Clegg [Thu, 21 Mar 2013 17:14:02 +0000 (10:14 -0700)]
add "usual orvos object details" tab on collections#show page
Tom Clegg [Thu, 21 Mar 2013 17:13:20 +0000 (10:13 -0700)]
use ORVOS_API_TOKEN environment variable in rails console
Tom Clegg [Thu, 21 Mar 2013 15:59:14 +0000 (08:59 -0700)]
add Link to known-types list
Ward Vandewege [Wed, 20 Mar 2013 19:52:14 +0000 (15:52 -0400)]
Do not assume
session[:api_client_authorization_id]
exists when session[:user_id] is set.
Tom Clegg [Wed, 20 Mar 2013 02:56:17 +0000 (19:56 -0700)]
fix list logic. refs #1405 refs #1406
Tom Clegg [Wed, 20 Mar 2013 02:50:10 +0000 (19:50 -0700)]
add delete method. refs #1406
Tom Clegg [Wed, 20 Mar 2013 02:46:11 +0000 (19:46 -0700)]
add update method. refs #1406
Tom Clegg [Wed, 20 Mar 2013 02:42:55 +0000 (19:42 -0700)]
generalize output logic. refs #1405 refs #1406
Tom Clegg [Wed, 20 Mar 2013 02:34:56 +0000 (19:34 -0700)]
add create method. refs #1406
Tom Clegg [Wed, 20 Mar 2013 02:34:37 +0000 (19:34 -0700)]
improve error checking
Tom Clegg [Wed, 20 Mar 2013 02:34:01 +0000 (19:34 -0700)]
handle parameter types :object, :datetime, :text. refs #1405 refs #1406
Ward Vandewege [Wed, 20 Mar 2013 01:38:48 +0000 (21:38 -0400)]
Handle errors more gracefully.
Ward Vandewege [Wed, 20 Mar 2013 01:25:28 +0000 (21:25 -0400)]
Do not blow up when a default value for an argument is a boolean.
Ward Vandewege [Wed, 20 Mar 2013 01:23:49 +0000 (21:23 -0400)]
Now make sure we are really using the new rest file. refs #1406
Tom Clegg [Wed, 20 Mar 2013 01:08:26 +0000 (18:08 -0700)]
fix call to api_client.uuid when api_client is nil
Ward Vandewege [Wed, 20 Mar 2013 01:07:24 +0000 (21:07 -0400)]
Merge branch 'master' of git.clinicalfuture.com:orvos-server
Ward Vandewege [Wed, 20 Mar 2013 01:06:44 +0000 (21:06 -0400)]
Move auto-generated REST discovery document to the right path.
refs #1406
Tom Clegg [Wed, 20 Mar 2013 00:38:35 +0000 (17:38 -0700)]
use new permission methods to check model transactions. refs #1415
Tom Clegg [Wed, 20 Mar 2013 00:18:03 +0000 (17:18 -0700)]
add per-user and per-session default_owner. refs #1415
Tom Clegg [Tue, 19 Mar 2013 21:07:10 +0000 (14:07 -0700)]
fix exception when tasks_summary[:running] == nil
Tom Clegg [Tue, 19 Mar 2013 20:30:10 +0000 (13:30 -0700)]
rename job steps to job tasks. refs #1416
Tom Clegg [Tue, 19 Mar 2013 20:22:08 +0000 (13:22 -0700)]
rename job steps to job tasks. refs #1416
Tom Clegg [Tue, 19 Mar 2013 20:05:17 +0000 (13:05 -0700)]
rename pipeline to pipeline template. refs #1416
Tom Clegg [Tue, 19 Mar 2013 19:53:08 +0000 (12:53 -0700)]
rename pipeline to pipeline template. refs #1416
Tom Clegg [Tue, 19 Mar 2013 18:47:53 +0000 (11:47 -0700)]
rename pipeline invocation to pipeline instance. refs #1416
Tom Clegg [Tue, 19 Mar 2013 18:18:15 +0000 (11:18 -0700)]
rename pipeline invocation to pipeline instance. refs #1416
Tom Clegg [Tue, 19 Mar 2013 17:12:04 +0000 (10:12 -0700)]
rename job command to script. refs #1416
Tom Clegg [Tue, 19 Mar 2013 19:19:37 +0000 (12:19 -0700)]
fix cache keys
Tom Clegg [Tue, 19 Mar 2013 17:11:41 +0000 (10:11 -0700)]
rename job command to script. refs #1416
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