arvados.git
5 years ago15345: Add .../containers/kill management API to dispatcher.
Tom Clegg [Tue, 18 Jun 2019 19:25:20 +0000 (15:25 -0400)]
15345: Add .../containers/kill management API to dispatcher.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

5 years ago15296: Shutdown cancels processes unless running inside a container
Peter Amstutz [Tue, 18 Jun 2019 17:28:40 +0000 (13:28 -0400)]
15296: Shutdown cancels processes unless running inside a container

Suppress errors in cancel request (such as a double-cancel race).

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

5 years ago14287: Unit-test router with stubbed API.
Tom Clegg [Tue, 18 Jun 2019 14:52:45 +0000 (10:52 -0400)]
14287: Unit-test router with stubbed API.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

5 years ago14874: Adds protected properties error handling to wb's tag editor.
Lucas Di Pentima [Tue, 18 Jun 2019 14:29:10 +0000 (11:29 -0300)]
14874: Adds protected properties error handling to wb's tag editor.

The tag editor notifies the user which tags are protected and restores their
state in the editor so they can be saved.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>

5 years agoMerge branch '15106-trgm-text-search'
Eric Biagiotti [Tue, 18 Jun 2019 14:06:43 +0000 (10:06 -0400)]
Merge branch '15106-trgm-text-search'

refs #15106

Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <ebiagiotti@veritasgenetics.com>

5 years ago15295: Updates fuse code with futurize stage2 and fixes tests
Eric Biagiotti [Mon, 17 Jun 2019 21:34:16 +0000 (17:34 -0400)]
15295: Updates fuse code with futurize stage2 and fixes tests

Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <ebiagiotti@veritasgenetics.com>

5 years ago15295: Fix test
Peter Amstutz [Mon, 17 Jun 2019 21:08:50 +0000 (17:08 -0400)]
15295: Fix test

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

5 years ago15295: Make "lock by different token" a PermissionDeniedError
Peter Amstutz [Mon, 17 Jun 2019 19:56:16 +0000 (15:56 -0400)]
15295: Make "lock by different token" a PermissionDeniedError

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

5 years ago14965: Updates fuse code with futurize stage1
Eric Biagiotti [Mon, 17 Jun 2019 19:14:35 +0000 (15:14 -0400)]
14965: Updates fuse code with futurize stage1

Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <ebiagiotti@veritasgenetics.com>

5 years ago15295: Check that keep references are well formed
Peter Amstutz [Mon, 17 Jun 2019 19:08:53 +0000 (15:08 -0400)]
15295: Check that keep references are well formed

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

5 years ago15106: Adds trigram support for "like" queries
Eric Biagiotti [Mon, 17 Jun 2019 18:58:17 +0000 (14:58 -0400)]
15106: Adds trigram support for "like" queries

Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <ebiagiotti@veritasgenetics.com>

5 years ago15295: Fix updating and checking lock_count when updating state
Peter Amstutz [Mon, 17 Jun 2019 18:28:53 +0000 (14:28 -0400)]
15295: Fix updating and checking lock_count when updating state

Previously lock_count was only updated on explicit lock or unlock
calls.  Now updates to state will correctly update or check
lock_count.

Also tweak row locking for containers, remove redudant reload, also
make sure lock and unlock take a lock.

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

5 years ago14965: Updates fuse tests with futurize stage2
Eric Biagiotti [Mon, 17 Jun 2019 17:44:08 +0000 (13:44 -0400)]
14965: Updates fuse tests with futurize stage2

Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <ebiagiotti@veritasgenetics.com>

5 years agoMerge branch '15087-wb-queued-containers' closes #15087
Peter Amstutz [Mon, 17 Jun 2019 15:20:15 +0000 (11:20 -0400)]
Merge branch '15087-wb-queued-containers' closes #15087

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

5 years ago15106: Fixes arvbox to update an existing arvados user to superuser
Eric Biagiotti [Mon, 17 Jun 2019 15:19:57 +0000 (11:19 -0400)]
15106: Fixes arvbox to update an existing arvados user to superuser

Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <ebiagiotti@veritasgenetics.com>

5 years ago14965: Updates fuse tests with futurize stage1
Eric Biagiotti [Fri, 14 Jun 2019 21:04:32 +0000 (17:04 -0400)]
14965: Updates fuse tests with futurize stage1

Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <ebiagiotti@veritasgenetics.com>

5 years ago"arvbox run test" is --interactive if not run with any other arguments.
Peter Amstutz [Mon, 17 Jun 2019 14:53:56 +0000 (10:53 -0400)]
"arvbox run test" is --interactive if not run with any other arguments.

no issue #

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

5 years ago14287: Update test to new config struct.
Tom Clegg [Fri, 14 Jun 2019 18:45:45 +0000 (14:45 -0400)]
14287: Update test to new config struct.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

5 years ago14287: Add EnableBetaController14287 to config whitelist map.
Tom Clegg [Thu, 13 Jun 2019 21:00:34 +0000 (17:00 -0400)]
14287: Add EnableBetaController14287 to config whitelist map.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

5 years ago14287: Move federation.Interface to arvados.API.
Tom Clegg [Thu, 13 Jun 2019 20:58:43 +0000 (16:58 -0400)]
14287: Move federation.Interface to arvados.API.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

5 years ago14287: ARVADOS_EXPERIMENTAL=14287 enables EnableBetaController14287.
Tom Clegg [Mon, 10 Jun 2019 19:24:26 +0000 (15:24 -0400)]
14287: ARVADOS_EXPERIMENTAL=14287 enables EnableBetaController14287.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

5 years ago14287: Skip database reset between tests.
Tom Clegg [Mon, 10 Jun 2019 13:28:43 +0000 (09:28 -0400)]
14287: Skip database reset between tests.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

5 years ago14287: Make collection name "" equivalent to null.
Tom Clegg [Wed, 5 Jun 2019 19:00:53 +0000 (15:00 -0400)]
14287: Make collection name "" equivalent to null.

Regardless of whether name is set/updated to "" or null, it is exempt
from the unique-name-in-project constraint, and returned as "" in API
responses.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

5 years ago14287: Omit false boolean params from API requests.
Tom Clegg [Tue, 4 Jun 2019 15:39:59 +0000 (11:39 -0400)]
14287: Omit false boolean params from API requests.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

5 years ago14287: Add include_trash param to GET options.
Tom Clegg [Thu, 30 May 2019 21:14:22 +0000 (17:14 -0400)]
14287: Add include_trash param to GET options.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

5 years ago14287: Add ensure_unique_name param to untrash options.
Tom Clegg [Thu, 30 May 2019 20:26:00 +0000 (16:26 -0400)]
14287: Add ensure_unique_name param to untrash options.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

5 years ago14287: Add cluster_id param to list options.
Tom Clegg [Thu, 30 May 2019 20:25:43 +0000 (16:25 -0400)]
14287: Add cluster_id param to list options.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

5 years ago14287: Fix extra create attrs in test cases.
Tom Clegg [Thu, 30 May 2019 20:00:44 +0000 (16:00 -0400)]
14287: Fix extra create attrs in test cases.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

5 years ago14287: Add collection trash & untrash endpoints.
Tom Clegg [Tue, 21 May 2019 21:19:12 +0000 (17:19 -0400)]
14287: Add collection trash & untrash endpoints.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

5 years ago14287: Use JSON body for 404 response.
Tom Clegg [Tue, 21 May 2019 21:18:35 +0000 (17:18 -0400)]
14287: Use JSON body for 404 response.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

5 years ago14287: Add debug logs.
Tom Clegg [Tue, 21 May 2019 15:40:39 +0000 (11:40 -0400)]
14287: Add debug logs.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

5 years ago14287: Use ctxlog for httpserver logging.
Tom Clegg [Tue, 21 May 2019 14:23:09 +0000 (10:23 -0400)]
14287: Use ctxlog for httpserver logging.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

5 years ago14287: Handle CORS OPTIONS requests.
Tom Clegg [Tue, 21 May 2019 13:38:57 +0000 (09:38 -0400)]
14287: Handle CORS OPTIONS requests.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

5 years ago14287: Enable readline history in run-tests.sh interactive mode.
Tom Clegg [Mon, 20 May 2019 20:04:02 +0000 (16:04 -0400)]
14287: Enable readline history in run-tests.sh interactive mode.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

5 years ago14287: Ignore etag and unsigned_manifest_text in collection updates.
Tom Clegg [Fri, 17 May 2019 19:31:28 +0000 (15:31 -0400)]
14287: Ignore etag and unsigned_manifest_text in collection updates.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

5 years ago14287: Use map instead of UpdateBody to update specific attrs.
Tom Clegg [Fri, 17 May 2019 19:30:20 +0000 (15:30 -0400)]
14287: Use map instead of UpdateBody to update specific attrs.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

5 years ago14287: Include x-request-id in test suite nginx access log.
Tom Clegg [Fri, 17 May 2019 19:28:31 +0000 (15:28 -0400)]
14287: Include x-request-id in test suite nginx access log.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

5 years ago14287: Propagate include_trash flag.
Tom Clegg [Thu, 16 May 2019 20:04:30 +0000 (16:04 -0400)]
14287: Propagate include_trash flag.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

5 years ago14287: Propagate "distinct" param.
Tom Clegg [Thu, 16 May 2019 18:09:48 +0000 (14:09 -0400)]
14287: Propagate "distinct" param.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

5 years ago14287: Don't send reader_tokens="[false]".
Tom Clegg [Thu, 16 May 2019 18:09:40 +0000 (14:09 -0400)]
14287: Don't send reader_tokens="[false]".

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

5 years ago14287: Change test fixture so PDH is really not readable by active.
Tom Clegg [Thu, 16 May 2019 15:30:47 +0000 (11:30 -0400)]
14287: Change test fixture so PDH is really not readable by active.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

5 years ago14287: Accept order param as string or array.
Tom Clegg [Thu, 16 May 2019 14:55:35 +0000 (10:55 -0400)]
14287: Accept order param as string or array.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

5 years ago14287: Propagate reader_tokens to Rails API.
Tom Clegg [Thu, 16 May 2019 13:56:53 +0000 (09:56 -0400)]
14287: Propagate reader_tokens to Rails API.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

5 years ago14287: Fix test fixture PDH.
Tom Clegg [Wed, 15 May 2019 18:41:23 +0000 (14:41 -0400)]
14287: Fix test fixture PDH.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

5 years ago14287: Fill in resp.items[].kind even if no uuid/pdh is selected.
Tom Clegg [Wed, 15 May 2019 16:04:19 +0000 (12:04 -0400)]
14287: Fill in resp.items[].kind even if no uuid/pdh is selected.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

5 years ago14287: Handle collection/.../provenance and .../used_by requests.
Tom Clegg [Tue, 14 May 2019 15:20:49 +0000 (11:20 -0400)]
14287: Handle collection/.../provenance and .../used_by requests.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

5 years ago14287: Test request formatting variations.
Tom Clegg [Tue, 14 May 2019 15:20:10 +0000 (11:20 -0400)]
14287: Test request formatting variations.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

5 years ago14287: Set controller log level=debug in tests if ARVADOS_DEBUG set.
Tom Clegg [Mon, 13 May 2019 19:58:43 +0000 (15:58 -0400)]
14287: Set controller log level=debug in tests if ARVADOS_DEBUG set.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

5 years ago14287: Propagate etag in collection records in responses.
Tom Clegg [Mon, 13 May 2019 19:58:01 +0000 (15:58 -0400)]
14287: Propagate etag in collection records in responses.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

5 years ago14287: Propagate where param in list requests.
Tom Clegg [Mon, 13 May 2019 19:57:36 +0000 (15:57 -0400)]
14287: Propagate where param in list requests.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

5 years ago14287: Remove extra zeroes from items[] entries too.
Tom Clegg [Mon, 13 May 2019 19:55:54 +0000 (15:55 -0400)]
14287: Remove extra zeroes from items[] entries too.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

5 years ago14287: Remove zero/missing values when req uses select or count=none.
Tom Clegg [Mon, 13 May 2019 19:51:51 +0000 (15:51 -0400)]
14287: Remove zero/missing values when req uses select or count=none.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

5 years ago14287: Add "kind" key to controller responses.
Tom Clegg [Fri, 10 May 2019 20:00:37 +0000 (16:00 -0400)]
14287: Add "kind" key to controller responses.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

5 years ago14287: Avoid converting integer params to float and back.
Tom Clegg [Thu, 9 May 2019 19:29:47 +0000 (15:29 -0400)]
14287: Avoid converting integer params to float and back.

Turns out int64(float64(MaxInt64)) was MinInt64, which is quite
different.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

5 years ago14287: Fix debug log level.
Tom Clegg [Thu, 9 May 2019 17:04:56 +0000 (13:04 -0400)]
14287: Fix debug log level.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

5 years ago14287: Remove omitempty tags so zeroes/nulls appear in responses.
Tom Clegg [Wed, 8 May 2019 15:45:22 +0000 (11:45 -0400)]
14287: Remove omitempty tags so zeroes/nulls appear in responses.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

5 years ago14287: Ensure timestamps in responses have 9 digits of nanoseconds.
Tom Clegg [Wed, 8 May 2019 15:43:33 +0000 (11:43 -0400)]
14287: Ensure timestamps in responses have 9 digits of nanoseconds.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

5 years ago14287: Fix accepting JSON-encoded params in request body.
Tom Clegg [Wed, 8 May 2019 15:36:29 +0000 (11:36 -0400)]
14287: Fix accepting JSON-encoded params in request body.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

5 years ago14287: Fix PDH check to ignore additional hints.
Tom Clegg [Wed, 8 May 2019 15:34:58 +0000 (11:34 -0400)]
14287: Fix PDH check to ignore additional hints.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

5 years ago14287: Fix PDHs and manifests in test fixtures.
Tom Clegg [Tue, 7 May 2019 19:49:57 +0000 (15:49 -0400)]
14287: Fix PDHs and manifests in test fixtures.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

5 years ago14287: Fix unparsed formatting directive.
Tom Clegg [Tue, 7 May 2019 19:24:36 +0000 (15:24 -0400)]
14287: Fix unparsed formatting directive.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

5 years ago14287: Propagate order param.
Tom Clegg [Tue, 7 May 2019 19:10:52 +0000 (15:10 -0400)]
14287: Propagate order param.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

5 years ago14287: Test timestamp precision is maintained by response munging.
Tom Clegg [Tue, 7 May 2019 17:50:52 +0000 (13:50 -0400)]
14287: Test timestamp precision is maintained by response munging.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

5 years ago14287: Fix token in container test.
Tom Clegg [Tue, 7 May 2019 13:47:01 +0000 (09:47 -0400)]
14287: Fix token in container test.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

5 years ago14287: Accept rpc requests without tokens.
Tom Clegg [Tue, 7 May 2019 13:45:58 +0000 (09:45 -0400)]
14287: Accept rpc requests without tokens.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

5 years ago14287: Fix accepting nil as filter operand.
Tom Clegg [Tue, 7 May 2019 13:40:47 +0000 (09:40 -0400)]
14287: Fix accepting nil as filter operand.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

5 years ago14287: Fix accepting boolean params via query string.
Tom Clegg [Tue, 7 May 2019 13:39:58 +0000 (09:39 -0400)]
14287: Fix accepting boolean params via query string.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

5 years ago14287: Dedup "UUIDs seen" list before diff in test.
Tom Clegg [Mon, 6 May 2019 20:44:12 +0000 (16:44 -0400)]
14287: Dedup "UUIDs seen" list before diff in test.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

5 years ago14287: Refactor controller to use strong types in API handlers.
Tom Clegg [Thu, 11 Apr 2019 20:20:13 +0000 (16:20 -0400)]
14287: Refactor controller to use strong types in API handlers.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

5 years agoMerge branch '15340-error-counters'
Tom Clegg [Mon, 17 Jun 2019 13:53:25 +0000 (09:53 -0400)]
Merge branch '15340-error-counters'

closes #15340

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

5 years ago15087: Add links to the oldest/longest running container
Peter Amstutz [Mon, 17 Jun 2019 13:37:05 +0000 (09:37 -0400)]
15087: Add links to the oldest/longest running container

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

5 years ago15340: Skip metrics update when running tests with no registry.
Tom Clegg [Fri, 14 Jun 2019 20:52:36 +0000 (16:52 -0400)]
15340: Skip metrics update when running tests with no registry.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

5 years ago14874: Shows errors when trying to update properties on wb1 tag editor.
Lucas Di Pentima [Fri, 14 Jun 2019 20:51:22 +0000 (17:51 -0300)]
14874: Shows errors when trying to update properties on wb1 tag editor.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>

5 years ago15340: Add metrics for cloud ops/errors and instance disappearances.
Tom Clegg [Fri, 14 Jun 2019 19:27:30 +0000 (15:27 -0400)]
15340: Add metrics for cloud ops/errors and instance disappearances.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

5 years ago14874: Fixes issue with keys being loaded as symbols from application.yml
Lucas Di Pentima [Fri, 14 Jun 2019 19:10:42 +0000 (16:10 -0300)]
14874: Fixes issue with keys being loaded as symbols from application.yml

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>

5 years ago14874: Adds admin documentation, grouping it with collection versioning.
Lucas Di Pentima [Fri, 14 Jun 2019 19:05:21 +0000 (16:05 -0300)]
14874: Adds admin documentation, grouping it with collection versioning.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>

5 years ago15087: Fix tests.
Peter Amstutz [Fri, 14 Jun 2019 18:40:17 +0000 (14:40 -0400)]
15087: Fix tests.

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

5 years agoMerge branch '15000-config-api'
Tom Clegg [Fri, 14 Jun 2019 18:28:49 +0000 (14:28 -0400)]
Merge branch '15000-config-api'

refs #15000

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

5 years ago15000: Recommend checking config publication errors during install.
Tom Clegg [Fri, 14 Jun 2019 18:21:18 +0000 (14:21 -0400)]
15000: Recommend checking config publication errors during install.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

5 years ago15106: Updates install and upgrade docs to include trgm prerequisites
Eric Biagiotti [Fri, 14 Jun 2019 17:59:24 +0000 (13:59 -0400)]
15106: Updates install and upgrade docs to include trgm prerequisites

Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <ebiagiotti@veritasgenetics.com>

5 years agoMerge branch '15368-python-deps' closes #15368
Peter Amstutz [Fri, 14 Jun 2019 17:35:51 +0000 (13:35 -0400)]
Merge branch '15368-python-deps' closes #15368

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

5 years ago15368: Don't require git to install arvados-python-client
Peter Amstutz [Fri, 14 Jun 2019 17:10:57 +0000 (13:10 -0400)]
15368: Don't require git to install arvados-python-client

It was catching CalledProcessError but if git is not installed the
error is actually OSError.

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

5 years ago15368: Change doc references from "arv keep put/get" to "arv-put/get"
Peter Amstutz [Fri, 14 Jun 2019 17:07:17 +0000 (13:07 -0400)]
15368: Change doc references from "arv keep put/get" to "arv-put/get"

Since the "arv" frontend just adds overhead and requires installing
both ruby and python SDK instead of just the python sdk.

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

5 years ago15368: Add note about debian dependencies for installing from pip
Peter Amstutz [Fri, 14 Jun 2019 17:06:08 +0000 (13:06 -0400)]
15368: Add note about debian dependencies for installing from pip

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

5 years ago15295: Needs locks_count
Peter Amstutz [Fri, 14 Jun 2019 15:09:13 +0000 (11:09 -0400)]
15295: Needs locks_count

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

5 years ago15087: Make container status a separate panel
Peter Amstutz [Fri, 14 Jun 2019 14:00:06 +0000 (10:00 -0400)]
15087: Make container status a separate panel

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

5 years ago15000: Update test.
Tom Clegg [Thu, 13 Jun 2019 21:03:50 +0000 (17:03 -0400)]
15000: Update test.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

5 years ago15087: Display pending/running containers and queue delay.
Peter Amstutz [Thu, 13 Jun 2019 20:39:27 +0000 (16:39 -0400)]
15087: Display pending/running containers and queue delay.

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

5 years ago15000: Move exported config threshold to "needed by clients".
Tom Clegg [Thu, 13 Jun 2019 19:46:01 +0000 (15:46 -0400)]
15000: Move exported config threshold to "needed by clients".

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

5 years ago15000: Remove example image ID.
Tom Clegg [Thu, 13 Jun 2019 19:45:38 +0000 (15:45 -0400)]
15000: Remove example image ID.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

5 years agoMerge branch '15332-fed-demo' refs #15332
Peter Amstutz [Thu, 13 Jun 2019 19:14:46 +0000 (15:14 -0400)]
Merge branch '15332-fed-demo' refs #15332

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

5 years ago15332: Updated federation demo to do something a little more interesting.
Peter Amstutz [Mon, 10 Jun 2019 21:25:17 +0000 (17:25 -0400)]
15332: Updated federation demo to do something a little more interesting.

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

5 years agoMerge remote-tracking branch 'origin/master' into 15106-trgm-text-search
Eric Biagiotti [Thu, 13 Jun 2019 17:22:37 +0000 (13:22 -0400)]
Merge remote-tracking branch 'origin/master' into 15106-trgm-text-search

refs #15106

Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <ebiagiotti@veritasgenetics.com>

5 years agoMerge branch '15003-config-default-location'
Tom Clegg [Thu, 13 Jun 2019 14:25:35 +0000 (10:25 -0400)]
Merge branch '15003-config-default-location'

refs #15003

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

5 years ago15106: Arvbox update to be able to run the trgm migration
Eric Biagiotti [Thu, 13 Jun 2019 14:22:47 +0000 (10:22 -0400)]
15106: Arvbox update to be able to run the trgm migration

Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <ebiagiotti@veritasgenetics.com>

5 years ago15000: Include bad value in error message.
Tom Clegg [Thu, 13 Jun 2019 13:32:02 +0000 (09:32 -0400)]
15000: Include bad value in error message.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

5 years ago15003: Load config from default location or -config arg, not stdin.
Tom Clegg [Wed, 12 Jun 2019 20:27:07 +0000 (16:27 -0400)]
15003: Load config from default location or -config arg, not stdin.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

5 years ago15106: Adds exception handling to the trgm migration
Eric Biagiotti [Wed, 12 Jun 2019 20:27:23 +0000 (16:27 -0400)]
15106: Adds exception handling to the trgm migration

Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <ebiagiotti@veritasgenetics.com>

5 years agoMerge branch '15138-version-our-documentation'
Ward Vandewege [Wed, 12 Jun 2019 18:02:08 +0000 (14:02 -0400)]
Merge branch '15138-version-our-documentation'

refs #15138

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <wvandewege@veritasgenetics.com>

5 years ago15138: Include logic to support building multiple versions of our documentation.
Ward Vandewege [Tue, 11 Jun 2019 17:42:40 +0000 (13:42 -0400)]
15138: Include logic to support building multiple versions of our documentation.

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <wvandewege@veritasgenetics.com>