arvados.git
4 years ago14965: Use netstat instead of lsof to check for listening process.
Tom Clegg [Tue, 9 Jul 2019 14:50:06 +0000 (10:50 -0400)]
14965: Use netstat instead of lsof to check for listening process.

`lsof -t -i tcp:1234` hangs if a zombie process exists on the system.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

4 years ago14965: Run py3 tests in the python3 virtualenv.
Tom Clegg [Tue, 9 Jul 2019 14:49:44 +0000 (10:49 -0400)]
14965: Run py3 tests in the python3 virtualenv.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

4 years agoArvbox won't create application.yml if arvados_config.rb exists.
Peter Amstutz [Mon, 8 Jul 2019 20:40:42 +0000 (16:40 -0400)]
Arvbox won't create application.yml if arvados_config.rb exists.

refs #14812

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

4 years agoMerge branch '14812-wb1-new-config' refs #14812
Peter Amstutz [Tue, 9 Jul 2019 14:00:13 +0000 (10:00 -0400)]
Merge branch '14812-wb1-new-config' refs #14812

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

4 years ago14812: Documentation fixes
Peter Amstutz [Tue, 9 Jul 2019 13:59:02 +0000 (09:59 -0400)]
14812: Documentation fixes

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

4 years ago14812: Add note about config migration to upgrading notes
Peter Amstutz [Mon, 8 Jul 2019 20:07:23 +0000 (16:07 -0400)]
14812: Add note about config migration to upgrading notes

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

4 years ago14812: Update API install documentation for new config as well.
Peter Amstutz [Mon, 8 Jul 2019 19:56:48 +0000 (15:56 -0400)]
14812: Update API install documentation for new config as well.

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

4 years ago14812: Add documentation about migrating Workbench config.
Peter Amstutz [Mon, 8 Jul 2019 19:04:52 +0000 (15:04 -0400)]
14812: Add documentation about migrating Workbench config.

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

4 years ago"arvbox clone" doesn't clone data, just dependencies. no issue #
Peter Amstutz [Mon, 8 Jul 2019 18:04:49 +0000 (14:04 -0400)]
"arvbox clone" doesn't clone data, just dependencies.  no issue #

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

4 years ago14812: Delete legacy load_config.rb
Peter Amstutz [Mon, 8 Jul 2019 17:34:39 +0000 (13:34 -0400)]
14812: Delete legacy load_config.rb

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

4 years agoMerge branch '15358-fetch-text-encoding' closes #15358
Peter Amstutz [Mon, 8 Jul 2019 15:24:19 +0000 (11:24 -0400)]
Merge branch '15358-fetch-text-encoding' closes #15358

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

4 years ago14812: Remove obsolete defaults from development section
Peter Amstutz [Mon, 8 Jul 2019 15:20:36 +0000 (11:20 -0400)]
14812: Remove obsolete defaults from development section

Fix tests

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

4 years ago14812: Improve error reporting
Peter Amstutz [Mon, 8 Jul 2019 15:06:05 +0000 (11:06 -0400)]
14812: Improve error reporting

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

4 years ago14287: Add GOPATH/bin to PATH.
Tom Clegg [Thu, 4 Jul 2019 15:19:16 +0000 (11:19 -0400)]
14287: Add GOPATH/bin to PATH.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

4 years ago14287: Remove extra panic after error running goimports.
Tom Clegg [Thu, 4 Jul 2019 13:24:43 +0000 (09:24 -0400)]
14287: Remove extra panic after error running goimports.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

4 years ago14287: Install goimports if needed.
Tom Clegg [Thu, 4 Jul 2019 13:18:24 +0000 (09:18 -0400)]
14287: Install goimports if needed.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

4 years ago14812: Sync config defaults (off by one line)
Peter Amstutz [Wed, 3 Jul 2019 20:35:08 +0000 (16:35 -0400)]
14812: Sync config defaults (off by one line)

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

4 years ago14812: We can't log the error, might as well make it fatal.
Peter Amstutz [Wed, 3 Jul 2019 20:18:11 +0000 (16:18 -0400)]
14812: We can't log the error, might as well make it fatal.

Rails.logger isn't initialized at this point.

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

4 years ago14965: Fix for default command args test
Eric Biagiotti [Wed, 3 Jul 2019 19:35:48 +0000 (15:35 -0400)]
14965: Fix for default command args test

Arvados-DCO-1.1-Signed-off-by:  <ebiagiotti@veritasgenetics.com>

4 years ago14812: Fix a couple more tests
Peter Amstutz [Wed, 3 Jul 2019 19:02:55 +0000 (15:02 -0400)]
14812: Fix a couple more tests

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

4 years ago14865: Reverts change to read op and fixes StringFile
Eric Biagiotti [Wed, 3 Jul 2019 18:42:56 +0000 (14:42 -0400)]
14865: Reverts change to read op and fixes StringFile

Changed the StringFile readfrom function to return utf-8 encoded bytes. This is what the fuse read op is expecting in Pyhton 3.

Arvados-DCO-1.1-Signed-off-by:  <ebiagiotti@veritasgenetics.com>

4 years agoMerge branch '15026-cloudtest'
Tom Clegg [Wed, 3 Jul 2019 18:26:15 +0000 (14:26 -0400)]
Merge branch '15026-cloudtest'

closes #15026

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

4 years ago15026: Fix infinite loop in -destroy-existing.
Tom Clegg [Wed, 3 Jul 2019 18:24:49 +0000 (14:24 -0400)]
15026: Fix infinite loop in -destroy-existing.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

4 years ago15026: Avoid special chars in default instanceSetID.
Tom Clegg [Wed, 3 Jul 2019 18:23:59 +0000 (14:23 -0400)]
15026: Avoid special chars in default instanceSetID.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

4 years agoUnify string quotation on python example scripts on doc site.
Lucas Di Pentima [Wed, 3 Jul 2019 18:14:08 +0000 (15:14 -0300)]
Unify string quotation on python example scripts on doc site.
No issue #

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>

4 years ago15358: Add encoding option to CollectionFsAccess.open() and use in fetch_text()
Peter Amstutz [Wed, 3 Jul 2019 18:03:33 +0000 (14:03 -0400)]
15358: Add encoding option to CollectionFsAccess.open() and use in fetch_text()

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

4 years ago14812: Tweak config export
Peter Amstutz [Wed, 3 Jul 2019 16:56:58 +0000 (12:56 -0400)]
14812: Tweak config export

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

4 years ago14812: Fix email defaults
Peter Amstutz [Wed, 3 Jul 2019 16:50:52 +0000 (12:50 -0400)]
14812: Fix email defaults

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

4 years ago14812: Move TrustAllContent to Collections
Peter Amstutz [Wed, 3 Jul 2019 14:58:54 +0000 (10:58 -0400)]
14812: Move TrustAllContent to Collections

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

4 years ago15380: Improves list filter search documentation
Eric Biagiotti [Wed, 3 Jul 2019 14:01:45 +0000 (10:01 -0400)]
15380: Improves list filter search documentation

Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <ebiagiotti@veritasgenetics.com>

4 years ago14812: Remove commented debug line
Peter Amstutz [Wed, 3 Jul 2019 13:29:44 +0000 (09:29 -0400)]
14812: Remove commented debug line

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

4 years ago14812: Migrate previously missed config items
Peter Amstutz [Wed, 3 Jul 2019 13:20:43 +0000 (09:20 -0400)]
14812: Migrate previously missed config items

Remove defaults from application.defaults.yml that now come from
arvados-server

Migrate comments describing configuration items

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

4 years ago14287: Merge list results from multiple backends.
Tom Clegg [Wed, 3 Jul 2019 13:10:38 +0000 (09:10 -0400)]
14287: Merge list results from multiple backends.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

4 years ago14287: Shut down RailsAPI before trying to reinstall.
Tom Clegg [Tue, 2 Jul 2019 14:10:41 +0000 (10:10 -0400)]
14287: Shut down RailsAPI before trying to reinstall.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

4 years ago14812: Fix lib/config tests
Peter Amstutz [Tue, 2 Jul 2019 17:42:17 +0000 (13:42 -0400)]
14812: Fix lib/config tests

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

4 years ago14965: Fixes unlink operation encoding
Eric Biagiotti [Tue, 2 Jul 2019 16:11:05 +0000 (12:11 -0400)]
14965: Fixes unlink operation encoding

Arvados-DCO-1.1-Signed-off-by:  <ebiagiotti@veritasgenetics.com>

4 years ago14965: Fixes test for checking the arvmount version
Eric Biagiotti [Tue, 2 Jul 2019 15:59:26 +0000 (11:59 -0400)]
14965: Fixes test for checking the arvmount version

Arvados-DCO-1.1-Signed-off-by:  <ebiagiotti@veritasgenetics.com>

4 years agoTweak arvbox build order, API server depends on arvados-server
Peter Amstutz [Mon, 1 Jul 2019 21:50:31 +0000 (17:50 -0400)]
Tweak arvbox build order, API server depends on arvados-server

refs #14812

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

4 years ago14812: Tweak install order because API server depends on arvados-server
Peter Amstutz [Mon, 1 Jul 2019 21:49:23 +0000 (17:49 -0400)]
14812: Tweak install order because API server depends on arvados-server

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

4 years ago14812: Migrate UserProfileFormFields
Peter Amstutz [Mon, 1 Jul 2019 20:35:29 +0000 (16:35 -0400)]
14812: Migrate UserProfileFormFields

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

4 years ago15380: Adds documentation for text search filtering
Eric Biagiotti [Mon, 1 Jul 2019 19:24:26 +0000 (15:24 -0400)]
15380: Adds documentation for text search filtering

- Fixes typo in the subproperties filtering section
- Adds a link to list common resource method page from the CLI reference page

Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <ebiagiotti@veritasgenetics.com>

4 years ago14812: Get defaults and config from arvados-server
Peter Amstutz [Mon, 1 Jul 2019 18:12:44 +0000 (14:12 -0400)]
14812: Get defaults and config from arvados-server

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

4 years ago14812: Fixing up integration tests
Peter Amstutz [Fri, 28 Jun 2019 21:24:01 +0000 (17:24 -0400)]
14812: Fixing up integration tests

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

4 years ago14812: Passing unit and functional tests
Peter Amstutz [Fri, 28 Jun 2019 16:33:41 +0000 (12:33 -0400)]
14812: Passing unit and functional tests

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

4 years ago14812: Fix test
Peter Amstutz [Thu, 27 Jun 2019 20:39:25 +0000 (16:39 -0400)]
14812: Fix test

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

4 years ago14812: First pass migrating tests.
Peter Amstutz [Thu, 27 Jun 2019 20:35:28 +0000 (16:35 -0400)]
14812: First pass migrating tests.

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

4 years ago14812: Finish first pass migrating config items
Peter Amstutz [Thu, 27 Jun 2019 19:18:39 +0000 (15:18 -0400)]
14812: Finish first pass migrating config items

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

4 years ago14812: Config migration WIP
Peter Amstutz [Thu, 27 Jun 2019 17:41:13 +0000 (13:41 -0400)]
14812: Config migration WIP

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

4 years agoMerge branch 'wb-test-runner-fixes'
Lucas Di Pentima [Mon, 1 Jul 2019 16:06:12 +0000 (13:06 -0300)]
Merge branch 'wb-test-runner-fixes'
No issue #

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>

4 years agoMerge branch '15026-cloudtest'
Tom Clegg [Mon, 1 Jul 2019 14:56:41 +0000 (10:56 -0400)]
Merge branch '15026-cloudtest'

refs #15026

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

4 years ago15026: Clean up confusing variable name.
Tom Clegg [Mon, 1 Jul 2019 14:55:26 +0000 (10:55 -0400)]
15026: Clean up confusing variable name.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

5 years agoFix arvados-health using controller listener config.
Tom Clegg [Fri, 28 Jun 2019 18:08:22 +0000 (14:08 -0400)]
Fix arvados-health using controller listener config.

No issue #

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

5 years agoFixes test runner execution so that it can run individual tests on rails 5
Lucas Di Pentima [Fri, 28 Jun 2019 15:40:48 +0000 (12:40 -0300)]
Fixes test runner execution so that it can run individual tests on rails 5

No issue #

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>

5 years agoMerge branch '15209-python-arv-deps-pinned'
Lucas Di Pentima [Thu, 27 Jun 2019 18:59:53 +0000 (15:59 -0300)]
Merge branch '15209-python-arv-deps-pinned'
Closes #15209

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>

5 years ago15209: Fixes pysdk dependency strings on pam, fuse & nodemanager.
Lucas Di Pentima [Thu, 27 Jun 2019 18:14:10 +0000 (15:14 -0300)]
15209: Fixes pysdk dependency strings on pam, fuse & nodemanager.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>

5 years agoMerge branch '14287-controller-structure'
Tom Clegg [Thu, 27 Jun 2019 17:34:08 +0000 (13:34 -0400)]
Merge branch '14287-controller-structure'

refs #14287

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

5 years agoMerge branch 'master' into 15209-python-arv-deps-pinned
Lucas Di Pentima [Thu, 27 Jun 2019 17:28:46 +0000 (14:28 -0300)]
Merge branch 'master' into 15209-python-arv-deps-pinned

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>

5 years ago15026: Add missing notextile tags.
Tom Clegg [Thu, 27 Jun 2019 14:58:46 +0000 (10:58 -0400)]
15026: Add missing notextile tags.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

5 years ago15209: Makes python components packages ask for current PySDK version.
Lucas Di Pentima [Thu, 27 Jun 2019 14:54:21 +0000 (11:54 -0300)]
15209: Makes python components packages ask for current PySDK version.

This make arvados-cwl-runner, arvados-nodemanager, arvados-fuse and arvados-pam
to ask for the current arvados-python-client version when building packages.
Ask pip to look for packages on the PySDK sdist directory, so that current and
not yet uploaded versions can be asked as dependency.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>

5 years ago14287: Merge branch 'master'
Tom Clegg [Thu, 27 Jun 2019 14:50:58 +0000 (10:50 -0400)]
14287: Merge branch 'master'

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

5 years ago15026: Add cloudtest page to admin docs.
Tom Clegg [Wed, 26 Jun 2019 20:17:02 +0000 (16:17 -0400)]
15026: Add cloudtest page to admin docs.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

5 years ago14965: Fixes the create operation encoding
Eric Biagiotti [Wed, 26 Jun 2019 20:02:39 +0000 (16:02 -0400)]
14965: Fixes the create operation encoding

Arvados-DCO-1.1-Signed-off-by:  <ebiagiotti@veritasgenetics.com>

5 years ago15026: Log duration of each list/create/destroy/exec operation.
Tom Clegg [Wed, 26 Jun 2019 19:19:08 +0000 (15:19 -0400)]
15026: Log duration of each list/create/destroy/exec operation.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

5 years agoMerge branch '15026-cloudtest'
Tom Clegg [Wed, 26 Jun 2019 18:55:31 +0000 (14:55 -0400)]
Merge branch '15026-cloudtest'

refs #15026

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

5 years ago14287: Don't delete non-writable attrs in create/update reqs.
Tom Clegg [Wed, 26 Jun 2019 17:40:36 +0000 (13:40 -0400)]
14287: Don't delete non-writable attrs in create/update reqs.

This is already handled by clients and/or RailsAPI anyway.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

5 years agoMerge remote-tracking branch 'origin/master' into 14965-arv-mount-py-three
Eric Biagiotti [Wed, 26 Jun 2019 15:39:04 +0000 (11:39 -0400)]
Merge remote-tracking branch 'origin/master' into 14965-arv-mount-py-three

refs #14965

Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <ebiagiotti@veritasgenetics.com>

5 years ago14965: Fixes read operation encoding
Eric Biagiotti [Wed, 26 Jun 2019 15:38:48 +0000 (11:38 -0400)]
14965: Fixes read operation encoding

Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <ebiagiotti@veritasgenetics.com>

5 years ago15026: Treat bad-tags and boot-timeout as deferred errors.
Tom Clegg [Tue, 25 Jun 2019 20:24:28 +0000 (16:24 -0400)]
15026: Treat bad-tags and boot-timeout as deferred errors.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

5 years ago15026: Remove redundant TagVerifier use.
Tom Clegg [Tue, 25 Jun 2019 20:23:08 +0000 (16:23 -0400)]
15026: Remove redundant TagVerifier use.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

5 years agoMerge branch '15396-trgm-docs'
Eric Biagiotti [Tue, 25 Jun 2019 18:44:31 +0000 (14:44 -0400)]
Merge branch '15396-trgm-docs'

Refs #15396

Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <ebiagiotti@veritasgenetics.com>

5 years agoMerge branch '14874-post-merge-fixes'
Lucas Di Pentima [Tue, 25 Jun 2019 18:30:41 +0000 (15:30 -0300)]
Merge branch '14874-post-merge-fixes'
Refs #14874

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>

5 years ago14287: Support federated requests for /used_by and /provenance.
Tom Clegg [Tue, 25 Jun 2019 18:10:19 +0000 (14:10 -0400)]
14287: Support federated requests for /used_by and /provenance.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

5 years ago14874: Fixed missing config sync.
Lucas Di Pentima [Tue, 25 Jun 2019 17:46:50 +0000 (14:46 -0300)]
14874: Fixed missing config sync.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>

5 years ago14874: Capitalizes managed properties keys, updates documentation.
Lucas Di Pentima [Tue, 25 Jun 2019 17:08:01 +0000 (14:08 -0300)]
14874: Capitalizes managed properties keys, updates documentation.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>

5 years ago14874: Adds Collections.ManagedProperties to Go SDK.
Lucas Di Pentima [Tue, 25 Jun 2019 16:20:24 +0000 (13:20 -0300)]
14874: Adds Collections.ManagedProperties to Go SDK.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>

5 years ago15396: Improves trgm update and installation docs
Eric Biagiotti [Tue, 25 Jun 2019 15:42:44 +0000 (11:42 -0400)]
15396: Improves trgm update and installation docs

Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <ebiagiotti@veritasgenetics.com>

5 years ago14287: Clean up context key usage.
Tom Clegg [Tue, 25 Jun 2019 15:39:41 +0000 (11:39 -0400)]
14287: Clean up context key usage.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

5 years agoMerge branch '14874-protected-collection-properties'
Lucas Di Pentima [Tue, 25 Jun 2019 14:29:13 +0000 (11:29 -0300)]
Merge branch '14874-protected-collection-properties'
Closes #14874

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>

5 years agoMerge branch '15345-kill-container-api'
Tom Clegg [Mon, 24 Jun 2019 22:55:55 +0000 (18:55 -0400)]
Merge branch '15345-kill-container-api'

closes #15345

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

5 years ago14965: Fixes subprocess.check_output parsing
Eric Biagiotti [Mon, 24 Jun 2019 18:18:53 +0000 (14:18 -0400)]
14965: Fixes subprocess.check_output parsing

Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <ebiagiotti@veritasgenetics.com>

5 years ago14965: Fix for inflexible llfuse function parameter
Eric Biagiotti [Mon, 24 Jun 2019 15:34:18 +0000 (11:34 -0400)]
14965: Fix for inflexible llfuse function parameter

Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <ebiagiotti@veritasgenetics.com>

llfuse.init expects the native str type in bother python 2 and 3, so the builtins.str type cannot be used.

5 years ago15345: Merge branch 'master' into 15345-kill-container-api
Tom Clegg [Mon, 24 Jun 2019 15:25:49 +0000 (11:25 -0400)]
15345: Merge branch 'master' into 15345-kill-container-api

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

5 years ago14287: Extract inline func.
Tom Clegg [Mon, 24 Jun 2019 15:21:30 +0000 (11:21 -0400)]
14287: Extract inline func.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

5 years ago14287: Specify response Content-Type.
Tom Clegg [Mon, 24 Jun 2019 15:20:55 +0000 (11:20 -0400)]
14287: Specify response Content-Type.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

5 years ago14287: Add comments to request param parsing.
Tom Clegg [Mon, 24 Jun 2019 15:20:25 +0000 (11:20 -0400)]
14287: Add comments to request param parsing.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

5 years agoMerge branch 'master' into 14874-protected-collection-properties
Lucas Di Pentima [Mon, 24 Jun 2019 13:22:52 +0000 (10:22 -0300)]
Merge branch 'master' into 14874-protected-collection-properties

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>

5 years ago14287: Comment and rename checker.go.
Tom Clegg [Mon, 24 Jun 2019 13:21:08 +0000 (09:21 -0400)]
14287: Comment and rename checker.go.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

5 years ago14874: Simplifies example scripts and expands documentation.
Lucas Di Pentima [Fri, 21 Jun 2019 22:14:51 +0000 (19:14 -0300)]
14874: Simplifies example scripts and expands documentation.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>

5 years agoMerge branch '15340-error-counters'
Tom Clegg [Fri, 21 Jun 2019 20:37:46 +0000 (16:37 -0400)]
Merge branch '15340-error-counters'

refs #15340

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

5 years ago15340: Fix uncounted Destroy ops.
Tom Clegg [Fri, 21 Jun 2019 20:12:56 +0000 (16:12 -0400)]
15340: Fix uncounted Destroy ops.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

5 years ago15026: Add comments.
Tom Clegg [Fri, 21 Jun 2019 20:01:38 +0000 (16:01 -0400)]
15026: Add comments.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

5 years ago15026: Add cloudtest command.
Tom Clegg [Fri, 21 Jun 2019 18:09:20 +0000 (14:09 -0400)]
15026: Add cloudtest command.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

5 years ago14874: Adds admin script examples on documentation.
Lucas Di Pentima [Fri, 21 Jun 2019 15:34:39 +0000 (12:34 -0300)]
14874: Adds admin script examples on documentation.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>

5 years ago14865: Fixes test mount type test
Eric Biagiotti [Thu, 20 Jun 2019 19:35:25 +0000 (15:35 -0400)]
14865: Fixes test mount type test

Arvados-DCO-1.1-Signed-off-by: Eric Biagiotti <ebiagiotti@veritasgenetics.com>

5 years ago14874: Renames DefaultProperties to ManagedProperties. Fixes documentation.
Lucas Di Pentima [Wed, 19 Jun 2019 20:28:44 +0000 (17:28 -0300)]
14874: Renames DefaultProperties to ManagedProperties. Fixes documentation.

Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>

5 years agoKeep relative URL when switching between versions in our documentation.
Ward Vandewege [Wed, 19 Jun 2019 19:02:10 +0000 (15:02 -0400)]
Keep relative URL when switching between versions in our documentation.

refs #15138

Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <wvandewege@veritasgenetics.com>

5 years agoMerge branch '15296-cwl-cancel-procs' closes #15296
Peter Amstutz [Wed, 19 Jun 2019 18:07:35 +0000 (14:07 -0400)]
Merge branch '15296-cwl-cancel-procs' closes #15296

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

5 years agoMerge branch '15295-keep-ref-check' closes #15295
Peter Amstutz [Wed, 19 Jun 2019 16:59:36 +0000 (12:59 -0400)]
Merge branch '15295-keep-ref-check' closes #15295

Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>

5 years agoTidy up error checks in govendor test.
Tom Clegg [Tue, 18 Jun 2019 20:37:46 +0000 (16:37 -0400)]
Tidy up error checks in govendor test.

No issue #

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>

5 years agoCheck for up-to-date govendor as a test rather than a setup task.
Tom Clegg [Tue, 18 Jun 2019 20:03:37 +0000 (16:03 -0400)]
Check for up-to-date govendor as a test rather than a setup task.

No issue #

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>