Peter Amstutz [Wed, 4 Oct 2017 12:35:02 +0000 (08:35 -0400)]
12125: Recognize that projects (groups) can be trashed, too.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Mon, 23 Oct 2017 12:44:15 +0000 (08:44 -0400)]
12125: Don't offer to untrash item if it isn't trash
Ensure that it behaves in a reasonable way if user has access to an item via a
sideways permission link instead of the usual ownership hierarchy.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Fri, 20 Oct 2017 20:37:10 +0000 (16:37 -0400)]
12125: Update trash tests
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Tom Clegg [Fri, 20 Oct 2017 19:02:25 +0000 (15:02 -0400)]
Merge branch '12216-webdav-list'
closes #12216
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Fri, 20 Oct 2017 17:59:45 +0000 (13:59 -0400)]
12462: Fix full-text search for terms like "foo.bar".
A search for a filename like "foo.bar" should match text "foo.bar" --
but "foo.bar" was transformed to "foo:* & bar:*", and since "." is a
word character, "bar:*" did not match "foo.bar".
Now "foo.bar" is transformed to "foo.bar:*".
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Fri, 20 Oct 2017 17:55:54 +0000 (13:55 -0400)]
12216: Merge branch 'master' into 12216-webdav-list
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Fri, 20 Oct 2017 17:18:45 +0000 (13:18 -0400)]
12216: Add cadaver to arvbox.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Fri, 20 Oct 2017 15:40:25 +0000 (11:40 -0400)]
12216: Document UUIDTTL in help message.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Lucas Di Pentima [Fri, 20 Oct 2017 14:33:04 +0000 (11:33 -0300)]
12018: resourceList interface simplification. Code re-stying.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Peter Amstutz [Fri, 20 Oct 2017 14:23:08 +0000 (10:23 -0400)]
12125: Added note about searching for collections within trash.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Fri, 20 Oct 2017 14:17:05 +0000 (10:17 -0400)]
12125: Don't show checkbox for items located within trashed project.
They can't be untrashed directly.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Thu, 19 Oct 2017 22:01:33 +0000 (18:01 -0400)]
12125: 404 page searches owners to find actual trashed object.
Change untrash behavior so that untrash button always directs to 404 page for
untrash confirmation. Provides better consistency of UX and ensures that
multiple levels of trash (such as a trashed collection within a trashed
project) are handled.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Tom Clegg [Fri, 20 Oct 2017 03:31:22 +0000 (23:31 -0400)]
11220: Revive "arv-get {block-locator}" ability.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Lucas Di Pentima [Fri, 20 Oct 2017 02:32:59 +0000 (23:32 -0300)]
12018: Simplify ListAll()
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Tom Clegg [Fri, 20 Oct 2017 02:30:40 +0000 (22:30 -0400)]
11220: Fix deprecated assertEquals -> assertEqual.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Fri, 20 Oct 2017 02:30:35 +0000 (22:30 -0400)]
11220: Don't bother trying to read manifests from Keep.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Lucas Di Pentima [Fri, 20 Oct 2017 00:41:25 +0000 (21:41 -0300)]
12018: Manage two way links for group memberships.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Lucas Di Pentima [Thu, 19 Oct 2017 22:06:47 +0000 (19:06 -0300)]
12018: Various updates, described below:
* Code styling.
* Added system_user as permission links owner.
* Improved userId option handling.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Peter Amstutz [Mon, 9 Oct 2017 20:41:05 +0000 (16:41 -0400)]
12125: Can search within trashed projects.
Don't show items within trashed projects in the complete list, but do make it
possible to search for them.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Fri, 6 Oct 2017 23:04:43 +0000 (19:04 -0400)]
12125: Displaying only trashed collections sort of works.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Wed, 4 Oct 2017 12:23:00 +0000 (08:23 -0400)]
12125: Expand test case.
Tests trashing project and checking that it shows up on the trash page. Tests
UI using both trash/recycle buttons and using selections.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Wed, 4 Oct 2017 01:05:54 +0000 (21:05 -0400)]
12125: Adding test
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Tue, 3 Oct 2017 17:17:00 +0000 (13:17 -0400)]
12125: Adjust table layout
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Reviewed-by: Peter Amstutz <peter.amstutz@curoverse.com>
Peter Amstutz [Tue, 3 Oct 2017 14:06:24 +0000 (10:06 -0400)]
12125: Missing file
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Mon, 18 Sep 2017 13:55:07 +0000 (09:55 -0400)]
12125: Restore "move trashed items to home" behavior for now.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Fri, 15 Sep 2017 12:33:22 +0000 (08:33 -0400)]
12125: Fix 404 page when not showing a specific object.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Fri, 15 Sep 2017 02:11:22 +0000 (22:11 -0400)]
12125: Workbench 404 page checks if item is in the trash.
Provides a convenient button to untrash it.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Fri, 15 Sep 2017 01:35:40 +0000 (21:35 -0400)]
12125: Can browse trashed projects & untrash them.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Fri, 15 Sep 2017 00:36:24 +0000 (20:36 -0400)]
12125: Initial work, separate collection and project trash tabs.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Thu, 19 Oct 2017 20:36:08 +0000 (16:36 -0400)]
Update libcloud pin for VHD delete bugfix. refs #12324
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Tom Clegg [Thu, 19 Oct 2017 18:15:47 +0000 (14:15 -0400)]
Merge branch '12461-cache-race'
refs #12461
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Thu, 19 Oct 2017 18:12:07 +0000 (14:12 -0400)]
Fix wrong HTTP status code for early "impossible path" check.
No issue #
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Peter Amstutz [Thu, 19 Oct 2017 18:09:34 +0000 (14:09 -0400)]
Merge branch '12467-read-imgload-response' closes #12467
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Thu, 19 Oct 2017 17:59:24 +0000 (13:59 -0400)]
12467: Fix log messages. Defer response.Body.Close().
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Thu, 19 Oct 2017 17:35:23 +0000 (13:35 -0400)]
12467: Wait for response that image loading is complete
Need to do this before trying to start container.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Thu, 19 Oct 2017 15:41:40 +0000 (11:41 -0400)]
Merge branch '12446-dispatcher-query' closes #12446
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Tue, 17 Oct 2017 14:30:42 +0000 (10:30 -0400)]
12446: Avoid listing every container uuid in status query.
Lucas Di Pentima [Wed, 18 Oct 2017 22:39:14 +0000 (19:39 -0300)]
12018: Skip CSV register if one of its fields is empty
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Lucas Di Pentima [Wed, 18 Oct 2017 21:36:22 +0000 (18:36 -0300)]
12018: Removed superfluous check
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Lucas Di Pentima [Wed, 18 Oct 2017 21:32:28 +0000 (18:32 -0300)]
12018: Added flag to specify a parent group UUID. When not given,
it tries to search for a default & system owned group, or create
one if none found.
Group List & Create operations adjusted to use the correct parent
group as owner.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Tom Clegg [Wed, 18 Oct 2017 19:37:54 +0000 (15:37 -0400)]
12461: Avoid race bug in Rails file cache.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Lucas Di Pentima [Wed, 18 Oct 2017 17:17:01 +0000 (14:17 -0300)]
12018: Several changes, listed below:
* Removed initial Python version.
* Removed superfluous input files checks and moved file opening
to be before any API calls, to avoid doing them is there's a problem
with the file.
* Added user, group & link types so they're populated by json decoding.
* Cleaned up ListAll() func so it can work with different resource
types.
* Changed usage of set style types from map[string]struct{} to be
map[string]bool to simplify membership checking.
* Corrected error messages to start with lowercase.
* Added more debug messages for -verbose mode.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Tom Clegg [Tue, 17 Oct 2017 19:49:14 +0000 (15:49 -0400)]
11260: Fix tests.
refs #11260
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Peter Amstutz [Wed, 18 Oct 2017 13:38:56 +0000 (09:38 -0400)]
Comment out sdk/go/health from run-tests.sh until it is fixed.
refs #12260
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Tue, 17 Oct 2017 19:23:25 +0000 (15:23 -0400)]
Merge branch '12452-nm-unpaired-down' refs #12452
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Tom Clegg [Tue, 17 Oct 2017 15:08:27 +0000 (11:08 -0400)]
12216: Merge branch 'master' into 12216-webdav-list
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Tue, 17 Oct 2017 15:06:16 +0000 (11:06 -0400)]
12216: Separate config for uuid->pdh cache TTL, default 5 seconds.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Peter Amstutz [Tue, 17 Oct 2017 14:50:23 +0000 (10:50 -0400)]
12452: Fix test
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Tom Clegg [Tue, 17 Oct 2017 14:24:19 +0000 (10:24 -0400)]
Merge branch '12260-system-health'
refs #12260
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Tue, 17 Oct 2017 14:23:37 +0000 (10:23 -0400)]
12260: Build arvados-health package.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Tue, 17 Oct 2017 13:06:50 +0000 (09:06 -0400)]
12260: Merge branch 'master' into 12260-system-health
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Peter Amstutz [Mon, 16 Oct 2017 19:50:36 +0000 (15:50 -0400)]
12452: Consider unpaired node older than boot grace period 'down'.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Tom Clegg [Mon, 16 Oct 2017 18:03:30 +0000 (14:03 -0400)]
12216: Allow Authorization header in cross-origin requests.
This allows browser-based applications to send tokens in Authorization
headers. This is the only token-passing mechanism that neither exposes
the token inappropriately in proxy/server logs nor interferes with
webdav's use of request bodies.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Peter Amstutz [Mon, 16 Oct 2017 18:01:50 +0000 (14:01 -0400)]
Merge branch '12447-crunch-run-leak' closes #12447
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Mon, 16 Oct 2017 17:13:44 +0000 (13:13 -0400)]
12447: Simplify BlockCache locking.
Close response body when content-length is missing.
Tweak messages related to crunch-run -memprofile.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Mon, 16 Oct 2017 17:00:55 +0000 (13:00 -0400)]
12447: Require Content-Length in KeepClient.Get
Fix test stub to report Content-Length.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Tom Clegg [Mon, 16 Oct 2017 14:44:54 +0000 (10:44 -0400)]
12260: Update comments to match real func/type names.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Peter Amstutz [Mon, 16 Oct 2017 14:41:18 +0000 (10:41 -0400)]
12447: Fix typo shadowing 'data' in BlockCache.Get
Move locking to BlockCache.setup()
Tweak tests to bind explicitly to loopback address.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Tom Clegg [Sun, 15 Oct 2017 17:17:06 +0000 (13:17 -0400)]
12216: Fix crash at path "/c=foo"
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Peter Amstutz [Sat, 14 Oct 2017 16:47:42 +0000 (12:47 -0400)]
12447: Remove .Bytes()
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Sat, 14 Oct 2017 15:58:14 +0000 (11:58 -0400)]
12447: Use ReadFull(). Use goimport for import formatting.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Tom Clegg [Sat, 14 Oct 2017 04:29:38 +0000 (00:29 -0400)]
12216: Avoid opening all files when generating webdav dir lists.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Fri, 13 Oct 2017 13:15:37 +0000 (09:15 -0400)]
12216: Allow Content-Type header via CORS.
AJAX libraries set Content-Type automatically, and it's safe for us to
accept it, so this means one less obstacle for browser applications.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Peter Amstutz [Fri, 13 Oct 2017 13:50:30 +0000 (09:50 -0400)]
12447: Add ClearBlockCache method to KeepClient
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Fri, 13 Oct 2017 01:13:17 +0000 (21:13 -0400)]
12447: Reduce memory footprint of crunch-run.
* BlockCache reads into a fixed-capacity buffer, to avoid reallocations (this
cuts resident memory usage by 1/2 and makes memory footprint extremely
stable)
* Limit the crunch-run BlockCache to 2 blocks instead of 4 (cuts footprint by
1/2 again)
* Clear the crunch-run BlockCache after loading the Docker image (probably cuts
post-image-load footprint by 1/2 again).
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Tom Clegg [Thu, 12 Oct 2017 18:42:34 +0000 (14:42 -0400)]
12216: Test webdav directory listings.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Thu, 12 Oct 2017 05:20:19 +0000 (01:20 -0400)]
12216: Disable lock operations.
Lock support in a webdav server is optional, and none of the
operations that would be affected by locks (i.e., writes) are
supported here anyway.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Thu, 12 Oct 2017 04:59:02 +0000 (00:59 -0400)]
12216: Use no-op locking system.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Peter Amstutz [Thu, 12 Oct 2017 16:59:18 +0000 (12:59 -0400)]
Merge branch '12431-nm-delete-nic' refs #12431
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Thu, 12 Oct 2017 16:58:35 +0000 (12:58 -0400)]
12431: Fix test
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Tom Clegg [Thu, 12 Oct 2017 13:23:42 +0000 (09:23 -0400)]
Merge branch '12416-s3-empty-object'
refs #12416
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Wed, 11 Oct 2017 20:28:43 +0000 (16:28 -0400)]
12416: Merge Put() into PutReader().
Put() was only used for empty blocks, and passing a nil reader to
PutReader works just as well.
This ensures the "put empty block" fix applies to all writes.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Thu, 12 Oct 2017 13:14:26 +0000 (09:14 -0400)]
12416: Merge branch 'fix/keepstore-s3-radosgw-empty-object' of https://github.com/wtsi-hgi/arvados into 12416-s3-empty-object
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Wed, 11 Oct 2017 21:17:02 +0000 (17:17 -0400)]
12216: Add webdav handler.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Joshua C. Randall [Sun, 8 Oct 2017 12:10:33 +0000 (12:10 +0000)]
fix s3_volume so that it can create empty recent/* objects on Ceph RadosGW
Arvados-DCO-1.1-Signed-off-by: Joshua C. Randall <jcrandall@alum.mit.edu>
Peter Amstutz [Wed, 11 Oct 2017 17:03:20 +0000 (13:03 -0400)]
12431: Use libcloud fork 2.2.2.dev1
Should address issue deleting NICs. Also add ex_fetch_power_state=False to
reduce Azure API calls.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Lucas Di Pentima [Wed, 11 Oct 2017 11:15:56 +0000 (08:15 -0300)]
12018: Ignore compiled binary
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Lucas Di Pentima [Wed, 11 Oct 2017 11:13:49 +0000 (08:13 -0300)]
12018: Remote group synchronization tool. First draft.
Arvados-DCO-1.1-Signed-off-by: Lucas Di Pentima <ldipentima@veritasgenetics.com>
Peter Amstutz [Tue, 10 Oct 2017 18:04:33 +0000 (14:04 -0400)]
Merge branch '12418-glob-empty-collection' closes #12418
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Tue, 10 Oct 2017 18:03:55 +0000 (14:03 -0400)]
12418: Add regression test for glob output on empty collection.
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Tue, 10 Oct 2017 15:19:47 +0000 (11:19 -0400)]
12418: Explicitly check if collection is not None
The empty collection evaluates to False, so it is necessary to explicitly check
for "not None".
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Peter Amstutz [Tue, 10 Oct 2017 17:09:38 +0000 (13:09 -0400)]
pin ciso8601 >=1.0.0, <=1.0.4 closes #12422
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Tom Clegg [Fri, 6 Oct 2017 14:15:39 +0000 (10:15 -0400)]
Update BytesAllocated -> BytesAllocatedCumulative in status report.
The number reported is the total of all buffer allocations since
startup. It doesn't take into account how many of those buffers have
since been freed.
refs #12402
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Fri, 6 Oct 2017 03:22:09 +0000 (23:22 -0400)]
12260: Add more services. Use existing package names.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Ward Vandewege [Thu, 5 Oct 2017 15:17:35 +0000 (11:17 -0400)]
Merge branch '12355-make-cwl-conformance-tests-faster'
closes #12355
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <wvandewege@veritasgenetics.com>
Ward Vandewege [Thu, 5 Oct 2017 15:17:08 +0000 (11:17 -0400)]
Merge branch 'master' into 12355-make-cwl-conformance-tests-faster
refs #12355
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <wvandewege@veritasgenetics.com>
Ward Vandewege [Wed, 4 Oct 2017 18:49:26 +0000 (14:49 -0400)]
arvbox: use overlay2 inside arvbox.
refs #12355
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <wvandewege@veritasgenetics.com>
Ward Vandewege [Wed, 4 Oct 2017 15:45:09 +0000 (11:45 -0400)]
arvbox: run the rails code in production mode when running in localdemo or
publicdemo.
refs #12355
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <wvandewege@veritasgenetics.com>
Peter Amstutz [Wed, 4 Oct 2017 01:06:58 +0000 (21:06 -0400)]
Add missing test files refs #12213
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Ward Vandewege [Wed, 4 Oct 2017 00:44:43 +0000 (20:44 -0400)]
arvbox: containers api: make crunch-dispatch-local poll more agressively
refs #12355
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <wvandewege@veritasgenetics.com>
Ward Vandewege [Wed, 4 Oct 2017 00:43:13 +0000 (20:43 -0400)]
arvbox: jobs api: crunch-dispatch: stop excessive stat of /etc/localtime
refs #12355
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <wvandewege@veritasgenetics.com>
Ward Vandewege [Wed, 4 Oct 2017 00:42:00 +0000 (20:42 -0400)]
arvbox: bump ruby version up to 2.3.5
refs #12355
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <wvandewege@veritasgenetics.com>
Ward Vandewege [Wed, 4 Oct 2017 00:39:07 +0000 (20:39 -0400)]
Run cwl conformance tests with the containers api.
refs #12355
Arvados-DCO-1.1-Signed-off-by: Ward Vandewege <wvandewege@veritasgenetics.com>
Tom Clegg [Tue, 3 Oct 2017 19:15:20 +0000 (15:15 -0400)]
12260: Add -config arg. Drop non-resolvable hostname support.
Change check key to svctype+http://host:port/path.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Tue, 3 Oct 2017 14:56:39 +0000 (10:56 -0400)]
Merge branch '8333-docker-repo-tag'
closes #8333
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Tue, 3 Oct 2017 14:55:42 +0000 (10:55 -0400)]
12260: Fix remote ping auth. Make server work.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Peter Amstutz [Tue, 3 Oct 2017 13:25:10 +0000 (09:25 -0400)]
Merge branch '12213-expression-keepref' closes #12213
Arvados-DCO-1.1-Signed-off-by: Peter Amstutz <pamstutz@veritasgenetics.com>
Tom Clegg [Tue, 3 Oct 2017 13:15:24 +0000 (09:15 -0400)]
8333: Support "myrepo.example:8888/repo/image"
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Tue, 3 Oct 2017 13:03:33 +0000 (09:03 -0400)]
8333: Support "myrepo.example:8888/repo/image:tag"
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
Tom Clegg [Tue, 3 Oct 2017 02:36:35 +0000 (22:36 -0400)]
12260: Improve data structures.
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tclegg@veritasgenetics.com>
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