git.arvados.org - arvados.git/history - crunch_scripts/arvados-bcbio-nextgen.py

[arvados.git] / crunch_scripts / arvados-bcbio-nextgen.py

2014-07-09	radhika	Merge branch 'master' into 3106-modal-loading-indicator	blob \| commitdiff \| raw
2014-07-08	radhika	Merge branch 'master' into 2380-ssh-doc	blob \| commitdiff \| raw
2014-07-08	Peter Amstutz	missing paren typo in arvados-bcbio-nextgen.py. refs...	blob \| commitdiff \| raw
2014-07-08	Peter Amstutz	bc-bio script links gemini reference data. refs #2991	blob \| commitdiff \| raw \| diff to current
2014-07-07	Peter Amstutz	add 'import sys' to arvados-bcbio-nextgen. no issue #	blob \| commitdiff \| raw \| diff to current
2014-07-07	radhika	Merge branch 'master' into 3140-project-content-tabs	blob \| commitdiff \| raw \| diff to current
2014-07-07	radhika	Merge branch 'master' into 2380-ssh-doc	blob \| commitdiff \| raw \| diff to current
2014-07-07	radhika	Merge branch 'master' into 3106-modal-loading-indicator	blob \| commitdiff \| raw \| diff to current
2014-07-07	Peter Amstutz	Default arvados-bcbio-nextgen pipeline to use freebayes...	blob \| commitdiff \| raw \| diff to current
2014-07-07	radhika	Merge branch 'master' into 3106-modal-loading-indicator	blob \| commitdiff \| raw \| diff to current
2014-07-07	Peter Amstutz	arvados-bcbio-nextgen writes output now. Put write_dir...	blob \| commitdiff \| raw \| diff to current
2014-07-07	Peter Amstutz	Bugfix os.environ() -> os.environ[] no issue #	blob \| commitdiff \| raw \| diff to current
2014-07-07	Peter Amstutz	Merge branch 'bcbio-nextgen' refs #2991	blob \| commitdiff \| raw \| diff to current
2014-07-07	Peter Amstutz	Add -n cores to run bcbio in parallel on a multicore...	blob \| commitdiff \| raw \| diff to current
2014-07-03	Peter Amstutz	fix bwa_index	blob \| commitdiff \| raw \| diff to current
2014-07-02	Peter Amstutz	Backed that out, make a symlink to tool-data instead	blob \| commitdiff \| raw \| diff to current
2014-07-02	Peter Amstutz	tool-data in work	blob \| commitdiff \| raw \| diff to current
2014-07-02	Peter Amstutz	fix sub R1 R2	blob \| commitdiff \| raw \| diff to current
2014-07-02	Peter Amstutz	refer template directly	blob \| commitdiff \| raw \| diff to current
2014-07-02	Peter Amstutz	write template	blob \| commitdiff \| raw \| diff to current
2014-07-02	Peter Amstutz	open for writing	blob \| commitdiff \| raw \| diff to current
2014-07-02	Peter Amstutz	fix config copy	blob \| commitdiff \| raw \| diff to current
2014-07-02	Peter Amstutz	fixed syntax error	blob \| commitdiff \| raw \| diff to current
2014-07-02	Peter Amstutz	Fixed +x	blob \| commitdiff \| raw \| diff to current
2014-07-02	Peter Amstutz	First try at bcbio-nextgen script	blob \| commitdiff \| raw \| diff to current

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