15924: Update github links to arvados org.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>

diff --git a/README.md b/README.md
index 08e645037f3ec39693029d5ab7f3e95cdeebe4cc..6b520b1af5e2c3fe10f016e3a3def8e1a3f2d702 100644 (file)
--- a/README.md
+++ b/README.md
@@ -59,7 +59,7 @@ contributors to Arvados.
 ## Development
 
 [![Build Status](https://ci.curoverse.com/buildStatus/icon?job=run-tests)](https://ci.curoverse.com/job/run-tests/)
 ## Development
 
 [![Build Status](https://ci.curoverse.com/buildStatus/icon?job=run-tests)](https://ci.curoverse.com/job/run-tests/)

-[![Go Report Card](https://goreportcard.com/badge/github.com/curoverse/arvados)](https://goreportcard.com/report/github.com/curoverse/arvados)
+[![Go Report Card](https://goreportcard.com/badge/github.com/arvados/arvados)](https://goreportcard.com/report/github.com/arvados/arvados)

 
 The Arvados public bug tracker is located at https://dev.arvados.org/projects/arvados/issues
 
 
 The Arvados public bug tracker is located at https://dev.arvados.org/projects/arvados/issues
 

diff --git a/apps/workbench/Gemfile b/apps/workbench/Gemfile
index 40cf4a86c0befdb7a5bd892f80d201d456a69430..24bfba383fc7065a5709293acb91943258a2842a 100644 (file)
--- a/apps/workbench/Gemfile
+++ b/apps/workbench/Gemfile
@@ -5,9 +5,9 @@
 source 'https://rubygems.org'
 
 gem 'rails', '~> 5.0.0'
 source 'https://rubygems.org'
 
 gem 'rails', '~> 5.0.0'

-gem 'arvados', git: 'https://github.com/curoverse/arvados.git', glob: 'sdk/ruby/arvados.gemspec'
+gem 'arvados', git: 'https://github.com/arvados/arvados.git', glob: 'sdk/ruby/arvados.gemspec'

 
 

-gem 'activerecord-nulldb-adapter', git: 'https://github.com/curoverse/nulldb'
+gem 'activerecord-nulldb-adapter', git: 'https://github.com/arvados/nulldb'

 gem 'multi_json'
 gem 'oj'
 gem 'sass'
 gem 'multi_json'
 gem 'oj'
 gem 'sass'


@@ -74,7 +74,7 @@ gem 'less-rails'
 # Wiselinks hasn't been updated for many years and it's using deprecated methods
 # Use our own Wiselinks fork until this PR is accepted:
 # https://github.com/igor-alexandrov/wiselinks/pull/116
 # Wiselinks hasn't been updated for many years and it's using deprecated methods
 # Use our own Wiselinks fork until this PR is accepted:
 # https://github.com/igor-alexandrov/wiselinks/pull/116

-# gem 'wiselinks', git: 'https://github.com/curoverse/wiselinks.git', branch: 'rails-5.1-compatibility'
+# gem 'wiselinks', git: 'https://github.com/arvados/wiselinks.git', branch: 'rails-5.1-compatibility'

 
 gem 'sshkey'
 
 
 gem 'sshkey'
 


@@ -98,7 +98,7 @@ gem 'piwik_analytics'
 gem 'httpclient', '~> 2.5'
 
 # This fork has Rails 4 compatible routes
 gem 'httpclient', '~> 2.5'
 
 # This fork has Rails 4 compatible routes

-gem 'themes_for_rails', git: 'https://github.com/curoverse/themes_for_rails'
+gem 'themes_for_rails', git: 'https://github.com/arvados/themes_for_rails'

 
 gem "deep_merge", :require => 'deep_merge/rails_compat'
 
 
 gem "deep_merge", :require => 'deep_merge/rails_compat'
 

diff --git a/apps/workbench/Gemfile.lock b/apps/workbench/Gemfile.lock
index ac3d4f8b62bab2933097ff6fe0eac9eeba4f52b4..158235776c86eec07850129d82a3a01a4ec7dd4d 100644 (file)
--- a/apps/workbench/Gemfile.lock
+++ b/apps/workbench/Gemfile.lock
@@ -1,5 +1,5 @@
 GIT
 GIT

-  remote: https://github.com/curoverse/arvados.git
+  remote: https://github.com/arvados/arvados.git

   revision: dd9f2403f43bcb93da5908ddde57d8c0491bb4c2
   glob: sdk/ruby/arvados.gemspec
   specs:
   revision: dd9f2403f43bcb93da5908ddde57d8c0491bb4c2
   glob: sdk/ruby/arvados.gemspec
   specs:


@@ -13,14 +13,14 @@ GIT
       jwt (>= 0.1.5, < 2)
 
 GIT
       jwt (>= 0.1.5, < 2)
 
 GIT

-  remote: https://github.com/curoverse/nulldb
+  remote: https://github.com/arvados/nulldb

   revision: d8e0073b665acdd2537c5eb15178a60f02f4b413
   specs:
     activerecord-nulldb-adapter (0.3.9)
       activerecord (>= 2.0.0)
 
 GIT
   revision: d8e0073b665acdd2537c5eb15178a60f02f4b413
   specs:
     activerecord-nulldb-adapter (0.3.9)
       activerecord (>= 2.0.0)
 
 GIT

-  remote: https://github.com/curoverse/themes_for_rails
+  remote: https://github.com/arvados/themes_for_rails

   revision: ddf6e592b3b6493ea0c2de7b5d3faa120ed35be0
   specs:
     themes_for_rails (0.5.1)
   revision: ddf6e592b3b6493ea0c2de7b5d3faa120ed35be0
   specs:
     themes_for_rails (0.5.1)

diff --git a/build/libcloud-pin.sh b/build/libcloud-pin.sh
index 65e9be568572ade6971105191033f4b45e7d0444..9cc2924e1bc47a71ccbb70f25c12fbd13473a5e1 100644 (file)
--- a/build/libcloud-pin.sh
+++ b/build/libcloud-pin.sh
@@ -6,7 +6,7 @@ LIBCLOUD_PIN=2.3.1.dev2
 
 using_fork=true
 if [[ $using_fork = true ]]; then
 
 using_fork=true
 if [[ $using_fork = true ]]; then

-    LIBCLOUD_PIN_SRC="https://github.com/curoverse/libcloud/archive/apache-libcloud-$LIBCLOUD_PIN.zip"
+    LIBCLOUD_PIN_SRC="https://github.com/arvados/libcloud/archive/apache-libcloud-$LIBCLOUD_PIN.zip"

 else
     LIBCLOUD_PIN_SRC=""
 fi
 else
     LIBCLOUD_PIN_SRC=""
 fi

diff --git a/doc/api/methods/jobs.html.textile.liquid b/doc/api/methods/jobs.html.textile.liquid
index 8b06c989a6604cd65b2c13f2b86a69abfa316457..13fa8387679c533184f0686d31681731a7752eb2 100644 (file)
--- a/doc/api/methods/jobs.html.textile.liquid
+++ b/doc/api/methods/jobs.html.textile.liquid
@@ -32,7 +32,7 @@ table(table table-bordered table-condensed).
 |repository|string|Git repository name or URL.|Source of the repository where the given script_version is to be found. This can be given as the name of a locally hosted repository, or as a publicly accessible URL starting with @git://@, @http://@, or @https://@.
 Examples:
 @yourusername/yourrepo@
 |repository|string|Git repository name or URL.|Source of the repository where the given script_version is to be found. This can be given as the name of a locally hosted repository, or as a publicly accessible URL starting with @git://@, @http://@, or @https://@.
 Examples:
 @yourusername/yourrepo@

-@https://github.com/curoverse/arvados.git@|
+@https://github.com/arvados/arvados.git@|

 |script_version|string|Git commit|During a **create** transaction, this is the Git branch, tag, or hash supplied by the client. Before the job starts, Arvados updates it to the full 40-character SHA-1 hash of the commit used by the job.
 See "Specifying Git versions":#script_version below for more detail about acceptable ways to specify a commit.|
 |cancelled_by_client_uuid|string|API client ID|Is null if job has not been cancelled|
 |script_version|string|Git commit|During a **create** transaction, this is the Git branch, tag, or hash supplied by the client. Before the job starts, Arvados updates it to the full 40-character SHA-1 hash of the commit used by the job.
 See "Specifying Git versions":#script_version below for more detail about acceptable ways to specify a commit.|
 |cancelled_by_client_uuid|string|API client ID|Is null if job has not been cancelled|

diff --git a/doc/index.html.liquid b/doc/index.html.liquid
index 54bc2ff22ed35efc155fd0bb2d8790bc2c0e57a6..f81cd59017432a1a9db19dd961a0905acddab67e 100644 (file)
--- a/doc/index.html.liquid
+++ b/doc/index.html.liquid
@@ -40,12 +40,12 @@ SPDX-License-Identifier: CC-BY-SA-3.0
       <p>Curii Corporation provides managed Arvados installations as well as commercial support for Arvados. Please contact <a href="mailto:info@curii.com">info@curii.com</a> for more information.</p>
 
       <p><strong>Contributing</strong></p>
       <p>Curii Corporation provides managed Arvados installations as well as commercial support for Arvados. Please contact <a href="mailto:info@curii.com">info@curii.com</a> for more information.</p>
 
       <p><strong>Contributing</strong></p>

-      <p>Please visit the <a href="https://dev.arvados.org/projects/arvados/wiki/Wiki#Contributing-and-hacking">developer site</a>. Arvados is 100% free and open source software, check out the code on <a href="https://github.com/curoverse/arvados">github</a>.
+      <p>Please visit the <a href="https://dev.arvados.org/projects/arvados/wiki/Wiki#Contributing-and-hacking">developer site</a>. Arvados is 100% free and open source software, check out the code on <a href="https://github.com/arvados/arvados">github</a>.

 
       <p>Arvados is under active development, see the <a href="https://dev.arvados.org/projects/arvados/activity">recent developer activity</a>.
       </p>
       <p><strong>License</strong></p>
 
       <p>Arvados is under active development, see the <a href="https://dev.arvados.org/projects/arvados/activity">recent developer activity</a>.
       </p>
       <p><strong>License</strong></p>

-      <p>Most of Arvados is licensed under the <a href="{{ site.baseurl }}/user/copying/agpl-3.0.html">GNU AGPL v3</a>. The SDKs are licensed under the <a href="{{ site.baseurl }}/user/copying/LICENSE-2.0.html">Apache License 2.0</a> so that they can be incorporated into proprietary code. See the <a href="https://github.com/curoverse/arvados/blob/master/COPYING">COPYING file</a> for more information.
+      <p>Most of Arvados is licensed under the <a href="{{ site.baseurl }}/user/copying/agpl-3.0.html">GNU AGPL v3</a>. The SDKs are licensed under the <a href="{{ site.baseurl }}/user/copying/LICENSE-2.0.html">Apache License 2.0</a> so that they can be incorporated into proprietary code. See the <a href="https://github.com/arvados/arvados/blob/master/COPYING">COPYING file</a> for more information.

       </p>
 
     </div>
       </p>
 
     </div>

diff --git a/doc/install/arvados-on-kubernetes.html.textile.liquid b/doc/install/arvados-on-kubernetes.html.textile.liquid
index 01999f0c2995bc6dd0cc38df719f7d9dbf0bf576..08b2c7329e1223f27d2650b8c43f0d3aec413784 100644 (file)
--- a/doc/install/arvados-on-kubernetes.html.textile.liquid
+++ b/doc/install/arvados-on-kubernetes.html.textile.liquid
@@ -58,7 +58,7 @@ h2(#git). Clone the repository
 Clone the repository and nagivate to the @arvados-kubernetes/charts/arvados@ directory:
 
 <pre>
 Clone the repository and nagivate to the @arvados-kubernetes/charts/arvados@ directory:
 
 <pre>

-$ git clone https://github.com/curoverse/arvados-kubernetes.git
+$ git clone https://github.com/arvados/arvados-kubernetes.git

 $ cd arvados-kubernetes/charts/arvados
 </pre>
 
 $ cd arvados-kubernetes/charts/arvados
 </pre>
 

diff --git a/doc/install/arvbox.html.textile.liquid b/doc/install/arvbox.html.textile.liquid
index 64cc9c6f89edd737f72b77b66d47f0cb623d3fe7..3fbd33928a5ae16582c9e58b8b6562a3f8a12f9e 100644 (file)
--- a/doc/install/arvbox.html.textile.liquid
+++ b/doc/install/arvbox.html.textile.liquid
@@ -14,7 +14,7 @@ Arvbox is a Docker-based self-contained development, demonstration and testing e
 h2. Quick start
 
 <pre>
 h2. Quick start
 
 <pre>

-$ git clone https://github.com/curoverse/arvados.git
+$ git clone https://github.com/arvados/arvados.git

 $ cd arvados/tools/arvbox/bin
 $ ./arvbox start localdemo
 </pre>
 $ cd arvados/tools/arvbox/bin
 $ ./arvbox start localdemo
 </pre>

diff --git a/doc/install/install-arv-git-httpd.html.textile.liquid b/doc/install/install-arv-git-httpd.html.textile.liquid
index c25fdee1dd3267eb00c038973c945bf41e735c5a..935f20dd69860a483112575cd84bba2a612ac1b8 100644 (file)
--- a/doc/install/install-arv-git-httpd.html.textile.liquid
+++ b/doc/install/install-arv-git-httpd.html.textile.liquid
@@ -369,7 +369,7 @@ In a couple of minutes, your arvados-git-sync cron job will create an empty repo
 
 <notextile>
 <pre><code>~$ <span class="userinput">cd /tmp</span>
 
 <notextile>
 <pre><code>~$ <span class="userinput">cd /tmp</span>

-/tmp$ <span class="userinput">git clone --bare https://github.com/curoverse/arvados.git</span>
+/tmp$ <span class="userinput">git clone --bare https://github.com/arvados/arvados.git</span>

 /tmp <span class="userinput">git --git-dir arvados.git push https://git.<b>uuid_prefix.your.domain</b>/arvados.git '*:*'</span>
 </code></pre>
 </notextile>
 /tmp <span class="userinput">git --git-dir arvados.git push https://git.<b>uuid_prefix.your.domain</b>/arvados.git '*:*'</span>
 </code></pre>
 </notextile>


@@ -378,7 +378,7 @@ If you did not set up a HTTPS service, you can push to <code>git@git.uuid_prefix
 
 <notextile>
 <pre><code>gitserver:~$ <span class="userinput">sudo -u git -i bash</span>
 
 <notextile>
 <pre><code>gitserver:~$ <span class="userinput">sudo -u git -i bash</span>

-git@gitserver:~$ <span class="userinput">git clone --bare https://github.com/curoverse/arvados.git /tmp/arvados.git</span>
+git@gitserver:~$ <span class="userinput">git clone --bare https://github.com/arvados/arvados.git /tmp/arvados.git</span>

 git@gitserver:~$ <span class="userinput">cd /tmp/arvados.git</span>
 git@gitserver:/tmp/arvados.git$ <span class="userinput">gitolite push /var/lib/arvados/git/repositories/<b>your_arvados_repo_uuid</b>.git '*:*'</span>
 </code></pre>
 git@gitserver:~$ <span class="userinput">cd /tmp/arvados.git</span>
 git@gitserver:/tmp/arvados.git$ <span class="userinput">gitolite push /var/lib/arvados/git/repositories/<b>your_arvados_repo_uuid</b>.git '*:*'</span>
 </code></pre>

diff --git a/doc/install/install-keep-web.html.textile.liquid b/doc/install/install-keep-web.html.textile.liquid
index a8833f44da20b8492227b46c7470a0cf5a26bfa2..ee2ff032b43cf8785248f97aa72b8fcf735c45b5 100644 (file)
--- a/doc/install/install-keep-web.html.textile.liquid
+++ b/doc/install/install-keep-web.html.textile.liquid
@@ -9,7 +9,7 @@ Copyright (C) The Arvados Authors. All rights reserved.
 SPDX-License-Identifier: CC-BY-SA-3.0
 {% endcomment %}
 
 SPDX-License-Identifier: CC-BY-SA-3.0
 {% endcomment %}
 

-The Keep-web server provides read/write HTTP (WebDAV) access to files stored in Keep. It serves public data to unauthenticated clients, and serves private data to clients that supply Arvados API tokens. It can be installed anywhere with access to Keep services, typically behind a web proxy that provides TLS support. See the "godoc page":http://godoc.org/github.com/curoverse/arvados/services/keep-web for more detail.
+The Keep-web server provides read/write HTTP (WebDAV) access to files stored in Keep. It serves public data to unauthenticated clients, and serves private data to clients that supply Arvados API tokens. It can be installed anywhere with access to Keep services, typically behind a web proxy that provides TLS support. See the "godoc page":http://godoc.org/github.com/arvados/arvados/services/keep-web for more detail.

 
 By convention, we use the following hostnames for the Keep-web service:
 
 
 By convention, we use the following hostnames for the Keep-web service:
 


@@ -97,7 +97,7 @@ server {
 </pre></notextile>
 
 {% include 'notebox_begin' %}
 </pre></notextile>
 
 {% include 'notebox_begin' %}

-If you restrict access to your Arvados services based on network topology -- for example, your proxy server is not reachable from the public internet -- additional proxy configuration might be needed to thwart cross-site scripting attacks that would circumvent your restrictions. Read the "'Intranet mode' section of the Keep-web documentation":https://godoc.org/github.com/curoverse/arvados/services/keep-web#hdr-Intranet_mode now.
+If you restrict access to your Arvados services based on network topology -- for example, your proxy server is not reachable from the public internet -- additional proxy configuration might be needed to thwart cross-site scripting attacks that would circumvent your restrictions. Read the "'Intranet mode' section of the Keep-web documentation":https://godoc.org/github.com/arvados/arvados/services/keep-web#hdr-Intranet_mode now.

 {% include 'notebox_end' %}
 
 h3(#dns). Configure DNS
 {% include 'notebox_end' %}
 
 h3(#dns). Configure DNS


@@ -110,7 +110,7 @@ Configure your DNS servers so the following names resolve to your Nginx proxy's
 
 If neither of the above wildcard options is feasible, you have two choices:
 # Serve web content at @collections.uuid_prefix.your.domain@, but only for unauthenticated requests (public data and collection sharing links). Authenticated requests will always result in file downloads, using the @download@ name. For example, the Workbench "preview" button and the "view entire log file" link will invoke file downloads instead of displaying content in the browser window.
 
 If neither of the above wildcard options is feasible, you have two choices:
 # Serve web content at @collections.uuid_prefix.your.domain@, but only for unauthenticated requests (public data and collection sharing links). Authenticated requests will always result in file downloads, using the @download@ name. For example, the Workbench "preview" button and the "view entire log file" link will invoke file downloads instead of displaying content in the browser window.

-# In the special case where you know you are immune to XSS exploits, you can enable the "trust all content" mode in Keep-web and Workbench (setting @Collections.TrustAllContent: true@ on the config file). With this enabled, inline web content can be served from a single @collections@ host name; no wildcard DNS or certificate is needed. Do not do this without understanding the security implications described in the "Keep-web documentation":http://godoc.org/github.com/curoverse/arvados/services/keep-web.
+# In the special case where you know you are immune to XSS exploits, you can enable the "trust all content" mode in Keep-web and Workbench (setting @Collections.TrustAllContent: true@ on the config file). With this enabled, inline web content can be served from a single @collections@ host name; no wildcard DNS or certificate is needed. Do not do this without understanding the security implications described in the "Keep-web documentation":http://godoc.org/github.com/arvados/arvados/services/keep-web.

 
 h2. Configure Keep-web
 
 
 h2. Configure Keep-web
 

diff --git a/doc/install/install-ws.html.textile.liquid b/doc/install/install-ws.html.textile.liquid
index f6a4bb5fafcc60fda70f936501a25c2f48bb0a13..0db21573e26a5c1c45fbcd8fdeb03ed88c82a5ec 100644 (file)
--- a/doc/install/install-ws.html.textile.liquid
+++ b/doc/install/install-ws.html.textile.liquid
@@ -9,7 +9,7 @@ Copyright (C) The Arvados Authors. All rights reserved.
 SPDX-License-Identifier: CC-BY-SA-3.0
 {% endcomment %}
 
 SPDX-License-Identifier: CC-BY-SA-3.0
 {% endcomment %}
 

-The arvados-ws server provides event notifications to websocket clients. It can be installed anywhere with access to Postgres database and the Arvados API server, typically behind a web proxy that provides SSL support. See the "godoc page":http://godoc.org/github.com/curoverse/arvados/services/ws for additional information.
+The arvados-ws server provides event notifications to websocket clients. It can be installed anywhere with access to Postgres database and the Arvados API server, typically behind a web proxy that provides SSL support. See the "godoc page":http://godoc.org/github.com/arvados/arvados/services/ws for additional information.

 
 By convention, we use the following hostname for the websocket service.
 
 
 By convention, we use the following hostname for the websocket service.
 

diff --git a/doc/sdk/cli/install.html.textile.liquid b/doc/sdk/cli/install.html.textile.liquid
index e72dc673a44d32571741cb4debffe13abb9c0aa5..de763691493f27bbefdecc7b9ae04a99a5b7ce3b 100644 (file)
--- a/doc/sdk/cli/install.html.textile.liquid
+++ b/doc/sdk/cli/install.html.textile.liquid
@@ -42,7 +42,7 @@ h3. Option 2: Build and install from source
 
 <notextile>
 <pre>
 
 <notextile>
 <pre>

-~$ <code class="userinput">git clone https://github.com/curoverse/arvados.git</code>
+~$ <code class="userinput">git clone https://github.com/arvados/arvados.git</code>

 ~$ <code class="userinput">cd arvados/sdk/cli</code>
 ~/arvados/sdk/cli$ <code class="userinput">gem build arvados-cli.gemspec</code>
 ~/arvados/sdk/cli$ <code class="userinput">sudo -i gem install arvados-cli-*.gem</code>
 ~$ <code class="userinput">cd arvados/sdk/cli</code>
 ~/arvados/sdk/cli$ <code class="userinput">gem build arvados-cli.gemspec</code>
 ~/arvados/sdk/cli$ <code class="userinput">sudo -i gem install arvados-cli-*.gem</code>

diff --git a/doc/sdk/java-v2/index.html.textile.liquid b/doc/sdk/java-v2/index.html.textile.liquid
index 0a8953a66130eeba5aa346cb74b741ca85c5dbba..300ec3085a72da4261d2e0e4df90221baaf6e395 100644 (file)
--- a/doc/sdk/java-v2/index.html.textile.liquid
+++ b/doc/sdk/java-v2/index.html.textile.liquid
@@ -137,7 +137,7 @@ Dependencies:
 
 <notextile>
 <pre>
 
 <notextile>
 <pre>

-$ <code class="userinput">git clone https://github.com/curoverse/arvados.git</code>
+$ <code class="userinput">git clone https://github.com/arvados/arvados.git</code>

 $ <code class="userinput">cd arvados/sdk/java-v2</code>
 $ <code class="userinput">gradle test</code>
 $ <code class="userinput">gradle jar</code>
 $ <code class="userinput">cd arvados/sdk/java-v2</code>
 $ <code class="userinput">gradle test</code>
 $ <code class="userinput">gradle jar</code>

diff --git a/doc/sdk/perl/index.html.textile.liquid b/doc/sdk/perl/index.html.textile.liquid
index 4ee29c00cd04989d35b71a2ddc6d233e628ed9cc..0561a47e787aa8a7b1675a903a3d782da6821a0c 100644 (file)
--- a/doc/sdk/perl/index.html.textile.liquid
+++ b/doc/sdk/perl/index.html.textile.liquid
@@ -44,7 +44,7 @@ First, install dependencies from your distribution.  Refer to the package lists
 Then run the following:
 
 <notextile>
 Then run the following:
 
 <notextile>

-<pre><code>~$ <span class="userinput">git clone https://github.com/curoverse/arvados.git</span>
+<pre><code>~$ <span class="userinput">git clone https://github.com/arvados/arvados.git</span>

 ~$ <span class="userinput">cd arvados/sdk/perl</span>
 ~$ <span class="userinput">perl Makefile.PL</span>
 ~$ <span class="userinput">sudo make install</span>
 ~$ <span class="userinput">cd arvados/sdk/perl</span>
 ~$ <span class="userinput">perl Makefile.PL</span>
 ~$ <span class="userinput">sudo make install</span>

diff --git a/doc/sdk/python/arvados-fuse.html.textile.liquid b/doc/sdk/python/arvados-fuse.html.textile.liquid
index b900dc932ffcb105a217686dbeac67aecee9e23b..80e793baa48cb8b0ff8712528dce83d6f6a92f6d 100644 (file)
--- a/doc/sdk/python/arvados-fuse.html.textile.liquid
+++ b/doc/sdk/python/arvados-fuse.html.textile.liquid
@@ -53,7 +53,7 @@ h4. Option 3: Install from source
 Install the @python-setuptools@ package from your distribution.  Then run the following:
 
 <notextile>
 Install the @python-setuptools@ package from your distribution.  Then run the following:
 
 <notextile>

-<pre><code>~$ <span class="userinput">git clone https://github.com/curoverse/arvados.git</span>
+<pre><code>~$ <span class="userinput">git clone https://github.com/arvados/arvados.git</span>

 ~$ <span class="userinput">cd arvados/services/fuse</span>
 ~/arvados/services/fuse$ <span class="userinput">python setup.py install</span>
 </code></pre>
 ~$ <span class="userinput">cd arvados/services/fuse</span>
 ~/arvados/services/fuse$ <span class="userinput">python setup.py install</span>
 </code></pre>

diff --git a/doc/sdk/ruby/index.html.textile.liquid b/doc/sdk/ruby/index.html.textile.liquid
index ec7bfaa2eb26f6f915a0c7cbd3bc0880d528492b..531469ea1acdf3ad665aaaa9e7a882cc32b843ea 100644 (file)
--- a/doc/sdk/ruby/index.html.textile.liquid
+++ b/doc/sdk/ruby/index.html.textile.liquid
@@ -34,7 +34,7 @@ h4. Option 2: build and install from source
 
 <notextile>
 <pre>
 
 <notextile>
 <pre>

-$ <code class="userinput">git clone https://github.com/curoverse/arvados.git</code>
+$ <code class="userinput">git clone https://github.com/arvados/arvados.git</code>

 $ <code class="userinput">cd arvados/sdk/ruby</code>
 $ <code class="userinput">gem build arvados.gemspec</code>
 $ <code class="userinput">sudo -i gem install arvados-*.gem</code>
 $ <code class="userinput">cd arvados/sdk/ruby</code>
 $ <code class="userinput">gem build arvados.gemspec</code>
 $ <code class="userinput">sudo -i gem install arvados-*.gem</code>

diff --git a/go.mod b/go.mod
index 6f75e7927dd9ce82ac0673d5bb237f91fa3fb309..033723d23680982c09763f2db7c0ebd6917953f5 100644 (file)
--- a/go.mod
+++ b/go.mod
@@ -62,4 +62,4 @@ require (
        rsc.io/getopt v0.0.0-20170811000552-20be20937449
 )
 
        rsc.io/getopt v0.0.0-20170811000552-20be20937449
 )
 

-replace github.com/AdRoll/goamz => github.com/curoverse/goamz v0.0.0-20190905141525-1bba09f407ef
+replace github.com/AdRoll/goamz => github.com/arvados/goamz v0.0.0-20190905141525-1bba09f407ef

diff --git a/go.sum b/go.sum
index 45ba0b179278ac83634d33d2be1e34d2a2a1a93c..d7a022dda99f2672a57d3d96e56ded48861292e1 100644 (file)
--- a/go.sum
+++ b/go.sum
@@ -17,6 +17,8 @@ github.com/alecthomas/units v0.0.0-20151022065526-2efee857e7cf/go.mod h1:ybxpYRF
 github.com/alecthomas/units v0.0.0-20190717042225-c3de453c63f4/go.mod h1:ybxpYRFXyAe+OPACYpWeL0wqObRcbAqCMya13uyzqw0=
 github.com/anmitsu/go-shlex v0.0.0-20161002113705-648efa622239 h1:kFOfPq6dUM1hTo4JG6LR5AXSUEsOjtdm0kw0FtQtMJA=
 github.com/anmitsu/go-shlex v0.0.0-20161002113705-648efa622239/go.mod h1:2FmKhYUyUczH0OGQWaF5ceTx0UBShxjsH6f8oGKYe2c=
 github.com/alecthomas/units v0.0.0-20190717042225-c3de453c63f4/go.mod h1:ybxpYRFXyAe+OPACYpWeL0wqObRcbAqCMya13uyzqw0=
 github.com/anmitsu/go-shlex v0.0.0-20161002113705-648efa622239 h1:kFOfPq6dUM1hTo4JG6LR5AXSUEsOjtdm0kw0FtQtMJA=
 github.com/anmitsu/go-shlex v0.0.0-20161002113705-648efa622239/go.mod h1:2FmKhYUyUczH0OGQWaF5ceTx0UBShxjsH6f8oGKYe2c=

+github.com/arvados/goamz v0.0.0-20190905141525-1bba09f407ef h1:cl7DIRbiAYNqaVxg3CZY8qfZoBOKrj06H/x9SPGaxas=
+github.com/arvados/goamz v0.0.0-20190905141525-1bba09f407ef/go.mod h1:rCtgyMmBGEbjTm37fCuBYbNL0IhztiALzo3OB9HyiOM=

 github.com/aws/aws-sdk-go v1.25.30 h1:I9qj6zW3mMfsg91e+GMSN/INcaX9tTFvr/l/BAHKaIY=
 github.com/aws/aws-sdk-go v1.25.30/go.mod h1:KmX6BPdI08NWTb3/sm4ZGu5ShLoqVDhKgpiN924inxo=
 github.com/beorn7/perks v0.0.0-20180321164747-3a771d992973/go.mod h1:Dwedo/Wpr24TaqPxmxbtue+5NUziq4I4S80YR8gNf3Q=
 github.com/aws/aws-sdk-go v1.25.30 h1:I9qj6zW3mMfsg91e+GMSN/INcaX9tTFvr/l/BAHKaIY=
 github.com/aws/aws-sdk-go v1.25.30/go.mod h1:KmX6BPdI08NWTb3/sm4ZGu5ShLoqVDhKgpiN924inxo=
 github.com/beorn7/perks v0.0.0-20180321164747-3a771d992973/go.mod h1:Dwedo/Wpr24TaqPxmxbtue+5NUziq4I4S80YR8gNf3Q=

diff --git a/sdk/cwl/setup.py b/sdk/cwl/setup.py
index d51781757479d91dce34bd3c71cf4782b9757e66..aa68933c6abc17f2d19860c2cd838a3026546257 100644 (file)
--- a/sdk/cwl/setup.py
+++ b/sdk/cwl/setup.py
@@ -27,7 +27,7 @@ setup(name='arvados-cwl-runner',
       author='Arvados',
       author_email='info@arvados.org',
       url="https://arvados.org",
       author='Arvados',
       author_email='info@arvados.org',
       url="https://arvados.org",

-      download_url="https://github.com/curoverse/arvados.git",
+      download_url="https://github.com/arvados/arvados.git",

       license='Apache 2.0',
       packages=find_packages(),
       package_data={'arvados_cwl': ['arv-cwl-schema-v1.0.yml', 'arv-cwl-schema-v1.1.yml']},
       license='Apache 2.0',
       packages=find_packages(),
       package_data={'arvados_cwl': ['arv-cwl-schema-v1.0.yml', 'arv-cwl-schema-v1.1.yml']},

diff --git a/sdk/cwl/tests/federation/arvbox/start.cwl b/sdk/cwl/tests/federation/arvbox/start.cwl
index d26a6b28ec8b82f08c4034e09a0688b9a6247398..57b348973d2ef7a8e7856f1bfbc69744f9485b92 100644 (file)
--- a/sdk/cwl/tests/federation/arvbox/start.cwl
+++ b/sdk/cwl/tests/federation/arvbox/start.cwl
@@ -74,7 +74,7 @@ arguments:
       mkdir -p $ARVBOX_DATA
       if ! test -d $ARVBOX_DATA/arvados ; then
         cd $ARVBOX_DATA
       mkdir -p $ARVBOX_DATA
       if ! test -d $ARVBOX_DATA/arvados ; then
         cd $ARVBOX_DATA

-        git clone https://github.com/curoverse/arvados.git
+        git clone https://github.com/arvados/arvados.git

       fi
       cd $ARVBOX_DATA/arvados
       gitver=`git rev-parse HEAD`
       fi
       cd $ARVBOX_DATA/arvados
       gitver=`git rev-parse HEAD`

diff --git a/sdk/java-v2/README.md b/sdk/java-v2/README.md
index ca5aef91c1a6c8a9f82995c9e8123e505b204994..4e8500a72f57b00c01d4332079b27bbd54c1b96b 100644 (file)
--- a/sdk/java-v2/README.md
+++ b/sdk/java-v2/README.md
@@ -9,7 +9,7 @@ SPDX-License-Identifier: CC-BY-SA-3.0
 ##### About
 Arvados Java Client allows to access Arvados servers and uses two APIs:
 * lower level [Keep Server API](https://doc.arvados.org/api/index.html)
 ##### About
 Arvados Java Client allows to access Arvados servers and uses two APIs:
 * lower level [Keep Server API](https://doc.arvados.org/api/index.html)

-* higher level [Keep-Web API](https://godoc.org/github.com/curoverse/arvados/services/keep-web) (when needed)
+* higher level [Keep-Web API](https://godoc.org/github.com/arvados/arvados/services/keep-web) (when needed)

 
 ##### Required Java version
 This SDK requires Java 8+
 
 ##### Required Java version
 This SDK requires Java 8+

diff --git a/sdk/java-v2/build.gradle b/sdk/java-v2/build.gradle
index 7de7a1102a8664dcce8391780b2aa192d9f4d68b..89f8a0cbb1b0ee812bb96ddf2ad6581f567867e2 100644 (file)
--- a/sdk/java-v2/build.gradle
+++ b/sdk/java-v2/build.gradle
@@ -85,12 +85,12 @@ uploadArchives {
         packaging 'jar'
         groupId 'org.arvados'
         description 'Arvados Java SDK'
         packaging 'jar'
         groupId 'org.arvados'
         description 'Arvados Java SDK'

-        url 'https://github.com/curoverse/arvados'
+        url 'https://github.com/arvados/arvados'

                
        scm {
                
        scm {

-         url 'scm:git@https://github.com/curoverse/arvados.git'
-         connection 'scm:git@https://github.com/curoverse/arvados.git'
-         developerConnection 'scm:git@https://github.com/curoverse/arvados.git'
+         url 'scm:git@https://github.com/arvados/arvados.git'
+         connection 'scm:git@https://github.com/arvados/arvados.git'
+         developerConnection 'scm:git@https://github.com/arvados/arvados.git'

        }
 
         licenses {
        }
 
         licenses {

diff --git a/sdk/pam/setup.py b/sdk/pam/setup.py
index 063ca2625c094cddab39694718f3a111e7d84f07..af00142a04756400491d52db4c9197f7ae094cdd 100755 (executable)
--- a/sdk/pam/setup.py
+++ b/sdk/pam/setup.py
@@ -35,7 +35,7 @@ setup(name='arvados-pam',
       author='Arvados',
       author_email='info@arvados.org',
       url='https://arvados.org',
       author='Arvados',
       author_email='info@arvados.org',
       url='https://arvados.org',

-      download_url='https://github.com/curoverse/arvados.git',
+      download_url='https://github.com/arvados/arvados.git',

       license='Apache 2.0',
       packages=[
           'arvados_pam',
       license='Apache 2.0',
       packages=[
           'arvados_pam',

diff --git a/sdk/python/setup.py b/sdk/python/setup.py
index 5130d187d3871a4db09a4c82f6c204137c23fd97..87977c2187e014017a2d76c4314ee3b1eede6b9c 100644 (file)
--- a/sdk/python/setup.py
+++ b/sdk/python/setup.py
@@ -28,7 +28,7 @@ setup(name='arvados-python-client',
       author='Arvados',
       author_email='info@arvados.org',
       url="https://arvados.org",
       author='Arvados',
       author_email='info@arvados.org',
       url="https://arvados.org",

-      download_url="https://github.com/curoverse/arvados.git",
+      download_url="https://github.com/arvados/arvados.git",

       license='Apache 2.0',
       packages=find_packages(),
       scripts=[
       license='Apache 2.0',
       packages=find_packages(),
       scripts=[

diff --git a/services/api/Gemfile b/services/api/Gemfile
index f166505bc07ea82703fb8673c919119003cc20c2..52a225c2374330f176d154d085c1e87c5687418b 100644 (file)
--- a/services/api/Gemfile
+++ b/services/api/Gemfile
@@ -53,14 +53,14 @@ gem 'andand'
 gem 'optimist'
 gem 'faye-websocket'
 
 gem 'optimist'
 gem 'faye-websocket'
 

-gem 'themes_for_rails', git: 'https://github.com/curoverse/themes_for_rails'
+gem 'themes_for_rails', git: 'https://github.com/arvados/themes_for_rails'

 
 # We need arvados-cli because of crunchv1. Note: bundler can't handle
 # two gems with the same "git" url but different "glob" values, hence
 # the use of a wildcard here instead of literal paths
 # (sdk/cli/arvados-cli.gem and sdk/ruby/arvados.gem).
 
 # We need arvados-cli because of crunchv1. Note: bundler can't handle
 # two gems with the same "git" url but different "glob" values, hence
 # the use of a wildcard here instead of literal paths
 # (sdk/cli/arvados-cli.gem and sdk/ruby/arvados.gem).

-gem 'arvados-cli', git: 'https://github.com/curoverse/arvados.git', glob: 'sdk/*/*.gemspec'
-gem 'arvados', git: 'https://github.com/curoverse/arvados.git', glob: 'sdk/*/*.gemspec'
+gem 'arvados-cli', git: 'https://github.com/arvados/arvados.git', glob: 'sdk/*/*.gemspec'
+gem 'arvados', git: 'https://github.com/arvados/arvados.git', glob: 'sdk/*/*.gemspec'

 gem 'httpclient'
 
 gem 'sshkey'
 gem 'httpclient'
 
 gem 'sshkey'

diff --git a/services/api/Gemfile.lock b/services/api/Gemfile.lock
index 1d698afc7f9acc53a2786446dd6264fa15707b0e..0057e60904a6f972d600d79098028d70349f9ff6 100644 (file)
--- a/services/api/Gemfile.lock
+++ b/services/api/Gemfile.lock
@@ -1,5 +1,5 @@
 GIT
 GIT

-  remote: https://github.com/curoverse/arvados.git
+  remote: https://github.com/arvados/arvados.git

   revision: dd9f2403f43bcb93da5908ddde57d8c0491bb4c2
   glob: sdk/*/*.gemspec
   specs:
   revision: dd9f2403f43bcb93da5908ddde57d8c0491bb4c2
   glob: sdk/*/*.gemspec
   specs:


@@ -23,7 +23,7 @@ GIT
       optimist (~> 3.0)
 
 GIT
       optimist (~> 3.0)
 
 GIT

-  remote: https://github.com/curoverse/themes_for_rails
+  remote: https://github.com/arvados/themes_for_rails

   revision: ddf6e592b3b6493ea0c2de7b5d3faa120ed35be0
   specs:
     themes_for_rails (0.5.1)
   revision: ddf6e592b3b6493ea0c2de7b5d3faa120ed35be0
   specs:
     themes_for_rails (0.5.1)

diff --git a/services/api/test/unit/commit_test.rb b/services/api/test/unit/commit_test.rb
index 63068ef9c5e05c76ef2f43eee546cb2c4531be9d..1c04abf364ae3d043bcb2748bbf18fc3f2a91ce9 100644 (file)
--- a/services/api/test/unit/commit_test.rb
+++ b/services/api/test/unit/commit_test.rb
@@ -35,9 +35,9 @@ class CommitTest < ActiveSupport::TestCase
   end
 
   [
   end
 
   [

-   'https://github.com/curoverse/arvados.git',
-   'http://github.com/curoverse/arvados.git',
-   'git://github.com/curoverse/arvados.git',
+   'https://github.com/arvados/arvados.git',
+   'http://github.com/arvados/arvados.git',
+   'git://github.com/arvados/arvados.git',

   ].each do |url|
     test "find_commit_range uses fetch_remote_repository to get #{url}" do
       fake_gitdir = repositories(:foo).server_path
   ].each do |url|
     test "find_commit_range uses fetch_remote_repository to get #{url}" do
       fake_gitdir = repositories(:foo).server_path


@@ -54,7 +54,7 @@ class CommitTest < ActiveSupport::TestCase
    '/not/allowed/.git',
    'file:///not/allowed.git',
    'git.arvados.org/arvados.git',
    '/not/allowed/.git',
    'file:///not/allowed.git',
    'git.arvados.org/arvados.git',

-   'github.com/curoverse/arvados.git',
+   'github.com/arvados/arvados.git',

   ].each do |url|
     test "find_commit_range skips fetch_remote_repository for #{url}" do
       CommitsHelper::expects(:fetch_remote_repository).never
   ].each do |url|
     test "find_commit_range skips fetch_remote_repository for #{url}" do
       CommitsHelper::expects(:fetch_remote_repository).never

diff --git a/services/dockercleaner/setup.py b/services/dockercleaner/setup.py
index 9d8505e7e66b333a2d336a68fc9eb6c3f147ce94..3bafe9ba86de55447258a2c364d9feb44b0b195b 100644 (file)
--- a/services/dockercleaner/setup.py
+++ b/services/dockercleaner/setup.py
@@ -27,7 +27,7 @@ setup(name="arvados-docker-cleaner",
       author="Arvados",
       author_email="info@arvados.org",
       url="https://arvados.org",
       author="Arvados",
       author_email="info@arvados.org",
       url="https://arvados.org",

-      download_url="https://github.com/curoverse/arvados.git",
+      download_url="https://github.com/arvados/arvados.git",

       license="GNU Affero General Public License version 3.0",
       packages=find_packages(),
       entry_points={
       license="GNU Affero General Public License version 3.0",
       packages=find_packages(),
       entry_points={

diff --git a/services/fuse/setup.py b/services/fuse/setup.py
index ae1aa019bbb43f55aee277afea61cc309ca8cbd7..83986706195723680a923428942e6f5cad160079 100644 (file)
--- a/services/fuse/setup.py
+++ b/services/fuse/setup.py
@@ -33,7 +33,7 @@ setup(name='arvados_fuse',
       author='Arvados',
       author_email='info@arvados.org',
       url="https://arvados.org",
       author='Arvados',
       author_email='info@arvados.org',
       url="https://arvados.org",

-      download_url="https://github.com/curoverse/arvados.git",
+      download_url="https://github.com/arvados/arvados.git",

       license='GNU Affero General Public License, version 3.0',
       packages=['arvados_fuse'],
       scripts=[
       license='GNU Affero General Public License, version 3.0',
       packages=['arvados_fuse'],
       scripts=[

diff --git a/tools/arvbox/bin/arvbox b/tools/arvbox/bin/arvbox
index 12a7f4caf19de1765ff983952f5ad5ea5f9ad5b6..df6012aaa1b85f0404e822d4cb1a952f62b4f6fd 100755 (executable)
--- a/tools/arvbox/bin/arvbox
+++ b/tools/arvbox/bin/arvbox
@@ -238,18 +238,18 @@ run() {
         mkdir -p "$PG_DATA" "$VAR_DATA" "$PASSENGER" "$GEMS" "$PIPCACHE" "$NPMCACHE" "$GOSTUFF" "$RLIBS"
 
         if ! test -d "$ARVADOS_ROOT" ; then
         mkdir -p "$PG_DATA" "$VAR_DATA" "$PASSENGER" "$GEMS" "$PIPCACHE" "$NPMCACHE" "$GOSTUFF" "$RLIBS"
 
         if ! test -d "$ARVADOS_ROOT" ; then

-            git clone https://github.com/curoverse/arvados.git "$ARVADOS_ROOT"
+            git clone https://github.com/arvados/arvados.git "$ARVADOS_ROOT"

         fi
         if ! test -d "$SSO_ROOT" ; then
         fi
         if ! test -d "$SSO_ROOT" ; then

-            git clone https://github.com/curoverse/sso-devise-omniauth-provider.git "$SSO_ROOT"
+            git clone https://github.com/arvados/sso-devise-omniauth-provider.git "$SSO_ROOT"

         fi
         if ! test -d "$COMPOSER_ROOT" ; then
         fi
         if ! test -d "$COMPOSER_ROOT" ; then

-            git clone https://github.com/curoverse/composer.git "$COMPOSER_ROOT"
+            git clone https://github.com/arvados/composer.git "$COMPOSER_ROOT"

             git -C "$COMPOSER_ROOT" checkout arvados-fork
             git -C "$COMPOSER_ROOT" pull
         fi
         if ! test -d "$WORKBENCH2_ROOT" ; then
             git -C "$COMPOSER_ROOT" checkout arvados-fork
             git -C "$COMPOSER_ROOT" pull
         fi
         if ! test -d "$WORKBENCH2_ROOT" ; then

-            git clone https://github.com/curoverse/arvados-workbench2.git "$WORKBENCH2_ROOT"
+            git clone https://github.com/arvados/arvados-workbench2.git "$WORKBENCH2_ROOT"

         fi
 
         if [[ "$CONFIG" = test ]] ; then
         fi
 
         if [[ "$CONFIG" = test ]] ; then

diff --git a/tools/arvbox/lib/arvbox/docker/Dockerfile.demo b/tools/arvbox/lib/arvbox/docker/Dockerfile.demo
index e6caa4624eaaabe82143856879f44a11d5f20adf..9b1466a47c7dabb2c079fd5e20c338d5a9de3503 100644 (file)
--- a/tools/arvbox/lib/arvbox/docker/Dockerfile.demo
+++ b/tools/arvbox/lib/arvbox/docker/Dockerfile.demo
@@ -9,16 +9,16 @@ ARG composer_version=arvados-fork
 ARG workbench2_version=master
 
 RUN cd /usr/src && \
 ARG workbench2_version=master
 
 RUN cd /usr/src && \

-    git clone --no-checkout https://github.com/curoverse/arvados.git && \
+    git clone --no-checkout https://github.com/arvados/arvados.git && \

     git -C arvados checkout ${arvados_version} && \
     git -C arvados pull && \
     git -C arvados checkout ${arvados_version} && \
     git -C arvados pull && \

-    git clone --no-checkout https://github.com/curoverse/sso-devise-omniauth-provider.git sso && \
+    git clone --no-checkout https://github.com/arvados/sso-devise-omniauth-provider.git sso && \

     git -C sso checkout ${sso_version} && \
     git -C sso pull && \
     git -C sso checkout ${sso_version} && \
     git -C sso pull && \

-    git clone --no-checkout https://github.com/curoverse/composer.git && \
+    git clone --no-checkout https://github.com/arvados/composer.git && \

     git -C composer checkout ${composer_version} && \
     git -C composer pull && \
     git -C composer checkout ${composer_version} && \
     git -C composer pull && \

-    git clone --no-checkout https://github.com/curoverse/arvados-workbench2.git workbench2 && \
+    git clone --no-checkout https://github.com/arvados/arvados-workbench2.git workbench2 && \

     git -C workbench2 checkout ${workbench2_version} && \
     git -C workbench2 pull
 
     git -C workbench2 checkout ${workbench2_version} && \
     git -C workbench2 pull
 

diff --git a/tools/crunchstat-summary/setup.py b/tools/crunchstat-summary/setup.py
index 642428181c685858fa1b6ee4d4861c6836e3e211..40c5a2f9a31be5922bba781b4b530d3b7363125f 100755 (executable)
--- a/tools/crunchstat-summary/setup.py
+++ b/tools/crunchstat-summary/setup.py
@@ -27,7 +27,7 @@ setup(name='crunchstat_summary',
       author='Arvados',
       author_email='info@arvados.org',
       url="https://arvados.org",
       author='Arvados',
       author_email='info@arvados.org',
       url="https://arvados.org",

-      download_url="https://github.com/curoverse/arvados.git",
+      download_url="https://github.com/arvados/arvados.git",

       license='GNU Affero General Public License, version 3.0',
       packages=['crunchstat_summary'],
       include_package_data=True,
       license='GNU Affero General Public License, version 3.0',
       packages=['crunchstat_summary'],
       include_package_data=True,