Merge branch '15397-remove-obsolete-apis'

[arvados.git] / doc / user / cwl / bwa-mem / bwa-mem-input-local.yml

diff --git a/doc/user/cwl/bwa-mem/bwa-mem-input-local.yml b/doc/user/cwl/bwa-mem/bwa-mem-input-local.yml
index 7f8c7bdb728c6d41fb9b5b2024e3a31b02b86540..6fbac268f4ed3b6005e5a49b879f6b6686d0d0f7 100755 (executable)
--- a/doc/user/cwl/bwa-mem/bwa-mem-input-local.yml
+++ b/doc/user/cwl/bwa-mem/bwa-mem-input-local.yml
@@ -1,14 +1,18 @@
-#!/usr/bin/env cwl-runner
+#!/usr/bin/env cwltool
+# Copyright (C) The Arvados Authors. All rights reserved.
+#
+# SPDX-License-Identifier: CC-BY-SA-3.0
+
 cwl:tool: bwa-mem.cwl
 reference:
   class: File
-  path: 19.fasta.bwt
+  location: 19.fasta.bwt
 read_p1:
   class: File
-  path: HWI-ST1027_129_D0THKACXX.1_1.fastq
+  location: HWI-ST1027_129_D0THKACXX.1_1.fastq
 read_p2:
   class: File
-  path: HWI-ST1027_129_D0THKACXX.1_2.fastq
+  location: HWI-ST1027_129_D0THKACXX.1_2.fastq
 group_id: arvados_tutorial
 sample_id: HWI-ST1027_129
 PL: illumina