#!/usr/bin/env cwltool
# Copyright (C) The Arvados Authors. All rights reserved.
#
# SPDX-License-Identifier: CC-BY-SA-3.0

cwl:tool: bwa-mem.cwl
reference:
  class: File
  location: 19.fasta.bwt
read_p1:
  class: File
  location: HWI-ST1027_129_D0THKACXX.1_1.fastq
read_p2:
  class: File
  location: HWI-ST1027_129_D0THKACXX.1_2.fastq
group_id: arvados_tutorial
sample_id: HWI-ST1027_129
PL: illumina