doc/user/cwl/bwa-mem/bwa-mem-input-uuids.yml

   1 #!/usr/bin/env cwl-runner
   2 # Copyright (C) The Arvados Authors. All rights reserved.
   3 #
   4 # SPDX-License-Identifier: CC-BY-SA-3.0
   5
   6 # Example input file using UUIDs to reference input collections. These
   7 # will be resolved to content addresses before running the workflow.
   8
   9 cwl:tool: bwa-mem.cwl
  10 reference:
  11   class: File
  12   location: keep:jutro-4zz18-tv416l321i4r01e/19.fasta.bwt
  13 read_p1:
  14   class: File
  15   location: keep:jutro-4zz18-8k5hsvee0izv2g3/HWI-ST1027_129_D0THKACXX.1_1.fastq
  16 read_p2:
  17   class: File
  18   location: keep:jutro-4zz18-8k5hsvee0izv2g3/HWI-ST1027_129_D0THKACXX.1_2.fastq
  19 group_id: arvados_tutorial
  20 sample_id: HWI-ST1027_129
  21 PL: illumina