doc/user/cwl/bwa-mem/bwa-mem-input-local.yml

   1 #!/usr/bin/env cwl-runner
   2 cwl:tool: bwa-mem.cwl
   3 reference:
   4   class: File
   5   path: 19.fasta.bwt
   6 read_p1:
   7   class: File
   8   path: HWI-ST1027_129_D0THKACXX.1_1.fastq
   9 read_p2:
  10   class: File
  11   path: HWI-ST1027_129_D0THKACXX.1_2.fastq
  12 group_id: arvados_tutorial
  13 sample_id: HWI-ST1027_129
  14 PL: illumina