doc/user/cwl/bwa-mem/bwa-mem-input-local.yml

   1 #!/usr/bin/env cwltool
   2 # Copyright (C) The Arvados Authors. All rights reserved.
   3 #
   4 # SPDX-License-Identifier: CC-BY-SA-3.0
   5
   6 cwl:tool: bwa-mem.cwl
   7 reference:
   8   class: File
   9   location: 19.fasta.bwt
  10 read_p1:
  11   class: File
  12   location: HWI-ST1027_129_D0THKACXX.1_1.fastq
  13 read_p2:
  14   class: File
  15   location: HWI-ST1027_129_D0THKACXX.1_2.fastq
  16 group_id: arvados_tutorial
  17 sample_id: HWI-ST1027_129
  18 PL: illumina