git.arvados.org - arvados-tutorial.git/tree - WGS-processing/cwl/helper/

drwxr-xr-x		..
-rw-r--r--	1354	annotate-vcf.cwl	blob \| history \| raw
-rw-r--r--	3190	bwamem-gatk-report-wf.cwl	blob \| history \| raw
-rw-r--r--	1975	bwamem-samtools-view.cwl	blob \| history \| raw
-rw-r--r--	1188	fastqc.cwl	blob \| history \| raw
-rw-r--r--	2193	gather-array-vcf.cwl	blob \| history \| raw
-rw-r--r--	2172	gather-vcf.cwl	blob \| history \| raw
-rw-r--r--	1928	gatk-applyBSQR-with-interval.cwl	blob \| history \| raw
-rw-r--r--	1946	gatk-baserecalibrator-with-interval.cwl	blob \| history \| raw
-rw-r--r--	1964	gatk-haplotypecaller-with-interval.cwl	blob \| history \| raw
-rw-r--r--	1681	gatk-selectvariants.cwl	blob \| history \| raw
-rw-r--r--	1644	gatk-splitintervals.cwl	blob \| history \| raw
-rw-r--r--	2023	gatk-wf-with-interval.cwl	blob \| history \| raw
-rw-r--r--	1066	generate-report.cwl	blob \| history \| raw
-rw-r--r--	1824	getfastq.cwl	blob \| history \| raw
-rw-r--r--	1452	gvcf-to-vcf.cwl	blob \| history \| raw
-rw-r--r--	1399	mark-duplicates.cwl	blob \| history \| raw
drwxr-xr-x	-	not-in-use	tree \| history
-rw-r--r--	1461	report-wf.cwl	blob \| history \| raw
-rw-r--r--	1165	samtools-index.cwl	blob \| history \| raw
-rw-r--r--	1266	samtools-sort.cwl	blob \| history \| raw
-rw-r--r--	1870	scatter-gatk-wf-with-interval.cwl	blob \| history \| raw