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2020-06-18	Sarah Wait...	yml to get fastq from directory	commit \| commitdiff \| tree \| snapshot
2020-06-18	Sarah Wait...	Adding code to get fastqs from directory	commit \| commitdiff \| tree \| snapshot
2020-06-18	Sarah Wait...	updating yml	commit \| commitdiff \| tree \| snapshot
2020-06-18	Sarah Wait...	Adding modified code to select variants and gather...	commit \| commitdiff \| tree \| snapshot
2020-06-18	Sarah Wait...	Adding files for gathering gvcfs and cleaning gvcfs	commit \| commitdiff \| tree \| snapshot
2020-06-18	Sarah Wait...	Adding yml files for gathering and intervals	commit \| commitdiff \| tree \| snapshot
2020-06-18	Sarah Wait...	Adding gather cwls	commit \| commitdiff \| tree \| snapshot
2020-06-18	Sarah Wait...	adding helper directory for structure, may reorg later	commit \| commitdiff \| tree \| snapshot
2020-06-18	Sarah Wait...	adding base recalibrator yml and updating bwamem yml	commit \| commitdiff \| tree \| snapshot
2020-06-18	Sarah Wait...	Updating bwamem CWL and adding base recalibrator cwl	commit \| commitdiff \| tree \| snapshot
2020-06-18	Sarah Wait...	removing unnecessary step, renaming cwl file	commit \| commitdiff \| tree \| snapshot
2020-06-18	Sarah Wait...	updating yml to include UK pgp example	commit \| commitdiff \| tree \| snapshot
2020-06-18	Sarah Wait...	updating cwl	commit \| commitdiff \| tree \| snapshot
2020-06-18	Sarah Wait...	updating dockerfiles	commit \| commitdiff \| tree \| snapshot
2020-06-18	Sarah Wait...	updating yml	commit \| commitdiff \| tree \| snapshot
2020-06-18	Sarah Wait...	Updating annotation and gatk code	commit \| commitdiff \| tree \| snapshot
2020-06-18	Sarah Wait...	updating preprocessing code	commit \| commitdiff \| tree \| snapshot
2020-06-18	Sarah Wait...	Adding ploidy code	commit \| commitdiff \| tree \| snapshot
2020-06-18	Sarah Wait...	Updating yml	commit \| commitdiff \| tree \| snapshot
2020-06-18	Sarah Wait...	Updating CWL for overarching workflow	commit \| commitdiff \| tree \| snapshot
2020-06-18	Sarah Wait...	cleaning up src directory and updating head.html	commit \| commitdiff \| tree \| snapshot
2020-06-18	Sarah Wait...	Adding cwl to convert gvcf to vcf	commit \| commitdiff \| tree \| snapshot
2020-06-18	Sarah Wait...	Updating cwl	commit \| commitdiff \| tree \| snapshot
2020-06-18	Sarah Wait...	Adding cwl to annotate and generate report	commit \| commitdiff \| tree \| snapshot
2020-02-27	Sarah Wait...	Updating files	commit \| commitdiff \| tree \| snapshot
2020-02-27	Sarah Wait...	Merge branch 'master' of git.arvados.org:arvados-tutorial	commit \| commitdiff \| tree \| snapshot
2020-02-27	Sarah Wait...	Rearranging Folders	commit \| commitdiff \| tree \| snapshot
2020-02-27	Sarah Wait...	Removing old annotation code	commit \| commitdiff \| tree \| snapshot
2020-02-27	Sarah Wait...	Updating report python code and removing vep step from...	commit \| commitdiff \| tree \| snapshot
2020-02-26	Sarah Wait...	Arvados-DCO-1.1-Signed-off-by: Sarah Wait Zaranek ...	commit \| commitdiff \| tree \| snapshot
2020-02-25	Sarah Wait...	Adding in progress code for annotation	commit \| commitdiff \| tree \| snapshot

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