projects
/
arvados-tutorial.git
/ commitdiff
summary
|
shortlog
|
log
|
commit
| commitdiff |
tree
raw
|
patch
| inline |
side by side
(parent:
ceab7a9
)
Removing old annotation code
author
Sarah Wait Zaranek <swz@curii.com>
Thu, 27 Feb 2020 18:54:54 +0000
(18:54 +0000)
committer
Sarah Wait Zaranek <sarah@curoverse.com>
Thu, 27 Feb 2020 18:54:54 +0000
(18:54 +0000)
Arvados-DCO-1.1-Signed-off-by: Sarah Wait Zaranek <swz@curii.com>
no issue #
cwl/bwa-gatk-wf.cwl
patch
|
blob
|
history
diff --git
a/cwl/bwa-gatk-wf.cwl
b/cwl/bwa-gatk-wf.cwl
index 675bdd04d86f6568c5855278bed45c0b79f928fa..6e1f326127baf9e2e016bfd2bad1c3c7d0b838ce 100644
(file)
--- a/
cwl/bwa-gatk-wf.cwl
+++ b/
cwl/bwa-gatk-wf.cwl
@@
-60,9
+60,3
@@
steps:
bam: samtools-index/out
sample: sample
out: [vcf]
- vep:
- run: vep.cwl
- in:
- vcf: haplotypecaller/vcf
- sample: sample
- out: [out-vcf]