updating for metadata and yml to check command line cwl

[arvados-tutorial.git] / WGS-processing / yml / helper / scatter-gatk-wf-with-interval.yml

diff --git a/WGS-processing/yml/helper/scatter-gatk-wf-with-interval.yml b/WGS-processing/yml/helper/scatter-gatk-wf-with-interval.yml
index 4909ce25bebd48ad6f446ef8ec9e5303d8e8dde9..f6d49433fc0f88f263e1d51665c7732e7e3eb95d 100644 (file)
--- a/WGS-processing/yml/helper/scatter-gatk-wf-with-interval.yml
+++ b/WGS-processing/yml/helper/scatter-gatk-wf-with-interval.yml
@@ -1,11 +1,15 @@
 bam:
   class: File
   location: keep:377c02de508dff9e4474f9a48d754933+53821/marked_dupsERR1726424.sorted.bam 
 bam:
   class: File
   location: keep:377c02de508dff9e4474f9a48d754933+53821/marked_dupsERR1726424.sorted.bam 

+

 reference:
   class: File
   location: keep:a3af04432df3d71d22f2fe8be549ba96+5974/hg38.fa
 reference:
   class: File
   location: keep:a3af04432df3d71d22f2fe8be549ba96+5974/hg38.fa

+

 sample: ERR1726424
 sample: ERR1726424

+

 scattercount: '32'
 scattercount: '32'

+

 knownsites1:
   class: File
   location: keep:7c0b13bda857fa15d88c1039182f69d5+8052/Homo_sapiens_assembly38.known_indels.vcf.gz
 knownsites1:
   class: File
   location: keep:7c0b13bda857fa15d88c1039182f69d5+8052/Homo_sapiens_assembly38.known_indels.vcf.gz