Updating yml for formats

[arvados-tutorial.git] / WGS-processing / cwl / helper / gvcf-to-vcf.cwl

diff --git a/WGS-processing/cwl/helper/gvcf-to-vcf.cwl b/WGS-processing/cwl/helper/gvcf-to-vcf.cwl
index 305227e9c7e7463f0a58b43be6d2d119b0af835e..7df5fe2eee41a0b08dde333102eb61726603ab03 100644 (file)
--- a/WGS-processing/cwl/helper/gvcf-to-vcf.cwl
+++ b/WGS-processing/cwl/helper/gvcf-to-vcf.cwl
@@ -1,11 +1,11 @@
 cwlVersion: v1.1
 class: CommandLineTool
-label: Convert GVCF to VCF 
+label: Convert GVCF to VCF
 
 requirements:
-  - class: DockerRequirement
+  DockerRequirement:
     dockerPull: curii/clinvar-report
-  - class: ShellCommandRequirement
+  ShellCommandRequirement: {}
 
 hints:
   ResourceRequirement:
@@ -39,7 +39,7 @@ outputs:
 
 arguments:
   - bcftools
-  - view 
+  - view
   - prefix: "--min-ac"
     valueFrom: "1"
   - $(inputs.gvcf.path)
@@ -62,6 +62,6 @@ $namespaces:
  s: https://schema.org/
  edam: http://edamontology.org/
 
-$schemas:
- - https://schema.org/version/latest/schema.rdf
- - http://edamontology.org/EDAM_1.18.owl
+#$schemas:
+# - https://schema.org/version/latest/schema.rdf
+# - http://edamontology.org/EDAM_1.18.owl