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Updating yml for formats
[arvados-tutorial.git] / WGS-processing / cwl / helper / annotate-vcf.cwl
diff --git a/WGS-processing/cwl/helper/annotate-vcf.cwl b/WGS-processing/cwl/helper/annotate-vcf.cwl
index bb4989e28b48aae7b6e346cbb3dc45e91d08110a..1e028c4adebba781620f27671f3e793575804561 100644 (file)
--- a/WGS-processing/cwl/helper/annotate-vcf.cwl
+++ b/WGS-processing/cwl/helper/annotate-vcf.cwl
@@ -3,9 +3,9 @@ class: CommandLineTool
 label: Annotate and filter VCF
 
 requirements:
 label: Annotate and filter VCF
 
 requirements:
-  - class: DockerRequirement
+  DockerRequirement:
     dockerPull: curii/clinvar-report
     dockerPull: curii/clinvar-report
-  - class: ShellCommandRequirement
+  ShellCommandRequirement: {}
 
 hints:
   ResourceRequirement:
 
 hints:
   ResourceRequirement:
@@ -32,7 +32,6 @@ inputs:
 
 outputs:
   reporttxt: stdout
 
 outputs:
   reporttxt: stdout
-  label: Annotated text from VCF
 
 arguments:
   - bcftools
 
 arguments:
   - bcftools