WGS-processing/yml/helper/gatk-wf-with-interval.yml

   1 bam:
   2   class: File
   3   format: edam:format_2572
   4   location: keep:377c02de508dff9e4474f9a48d754933+53821/marked_dupsERR1726424.sorted.bam
   5
   6 reference:
   7   class: File
   8   format: edam:format_1929
   9   location: keep:a3af04432df3d71d22f2fe8be549ba96+5974/hg38.fa
  10
  11 intervallist:
  12   class: File
  13   location: keep:4d4947f6637f0acec32580e09d991967+815/0000-scattered.interval_list
  14
  15 sample: ERR1726424
  16
  17 knownsites:
  18   class: File
  19   format: edam:format_3016
  20   location: keep:7c0b13bda857fa15d88c1039182f69d5+8052/Homo_sapiens_assembly38.known_indels.vcf.gz