jenkins/run-cwl-tests.sh

   1 #!/bin/bash
   2
   3 read -rd "\000" helpmessage <<EOF
   4 $(basename $0): Test cwl tool and (optionally) upload to PyPi and Docker Hub.
   5
   6 Syntax:
   7         WORKSPACE=/path/to/common-workflow-language $(basename $0) [options]
   8
   9 Options:
  10
  11 --upload-pypi          Upload package to pypi (default: false)
  12 --upload-docker        Upload packages to docker hub (default: false)
  13 --debug                Output debug information (default: false)
  14
  15 WORKSPACE=path         Path to the common-workflow-language source tree
  16
  17 EOF
  18
  19 EXITCODE=0
  20 CALL_FREIGHT=0
  21
  22 DEBUG=0
  23 UPLOAD_PYPI=0
  24 UPLOAD_DOCKER=0
  25
  26 VENVDIR=
  27
  28 leave_temp=
  29
  30 declare -A leave_temp
  31
  32 set -e
  33
  34 clear_temp() {
  35     leaving=""
  36     for var in VENVDIR
  37     do
  38         if [[ -z "${leave_temp[$var]}" ]]
  39         then
  40             if [[ -n "${!var}" ]]
  41             then
  42                 rm -rf "${!var}"
  43             fi
  44         else
  45             leaving+=" $var=\"${!var}\""
  46         fi
  47     done
  48     if [[ -n "$leaving" ]]; then
  49         echo "Leaving behind temp dirs: $leaving"
  50     fi
  51 }
  52
  53 fatal() {
  54     clear_temp
  55     echo >&2 "Fatal: $* (encountered in ${FUNCNAME[1]} at ${BASH_SOURCE[1]} line ${BASH_LINENO[0]})"
  56     exit 1
  57 }
  58
  59 trap clear_temp INT EXIT
  60
  61 # Set up temporary install dirs (unless existing dirs were supplied)
  62 for tmpdir in VENVDIR
  63 do
  64     if [[ -n "${!tmpdir}" ]]; then
  65         leave_temp[$tmpdir]=1
  66     else
  67         eval $tmpdir=$(mktemp -d)
  68     fi
  69 done
  70
  71
  72 while [[ -n "$1" ]]
  73 do
  74     arg="$1"; shift
  75     case "$arg" in
  76         --help)
  77             echo >&2 "$helpmessage"
  78             echo >&2
  79             exit 1
  80             ;;
  81         --debug)
  82             DEBUG=1
  83             ;;
  84         --upload-pypi)
  85             UPLOAD_PYPI=1
  86             ;;
  87         --upload-docker)
  88             UPLOAD_DOCKER=1
  89             ;;
  90         --leave-temp)
  91             leave_temp[VENVDIR]=1
  92             ;;
  93         *=*)
  94             eval export $(echo $arg | cut -d= -f1)=\"$(echo $arg | cut -d= -f2-)\"
  95             ;;
  96         *)
  97             echo >&2 "$0: Unrecognized option: '$arg'. Try: $0 --help"
  98             exit 1
  99             ;;
 100     esac
 101 done
 102
 103 # Sanity check
 104 if ! [[ -n "$WORKSPACE" ]]; then
 105   echo >&2 "$helpmessage"
 106   echo >&2
 107   echo >&2 "Error: WORKSPACE environment variable not set"
 108   echo >&2
 109   exit 1
 110 fi
 111
 112 if [[ "$DEBUG" != 0 ]]; then
 113   echo "Workspace is $WORKSPACE"
 114 fi
 115
 116 virtualenv --setuptools "$VENVDIR" || fatal "virtualenv $VENVDIR failed"
 117 . "$VENVDIR/bin/activate"
 118
 119 handle_python_package () {
 120   # This function assumes the current working directory is the python package directory
 121   if [[ "$UPLOAD_PYPI" != 0 ]]; then
 122     # Make sure only to use sdist - that's the only format pip can deal with (sigh)
 123     if [[ "$DEBUG" != 0 ]]; then
 124       python setup.py sdist upload
 125     else
 126       python setup.py -q sdist upload
 127     fi
 128   else
 129     # Make sure only to use sdist - that's the only format pip can deal with (sigh)
 130     if [[ "$DEBUG" != 0 ]]; then
 131       python setup.py sdist
 132     else
 133       python setup.py -q sdist
 134     fi
 135   fi
 136 }
 137
 138 # Make all files world-readable -- jenkins runs with umask 027, and has checked
 139 # out our git tree here
 140 chmod o+r "$WORKSPACE" -R
 141
 142 # Now fix our umask to something better suited to building and publishing
 143 # gems and packages
 144 umask 0022
 145
 146 if [[ "$DEBUG" != 0 ]]; then
 147   echo "umask is" `umask`
 148 fi
 149
 150 # Python packages
 151 if [[ "$DEBUG" != 0 ]]; then
 152   echo
 153   echo "Python packages"
 154   echo
 155 fi
 156
 157 cd "$WORKSPACE"
 158
 159 pushd reference
 160 python setup.py install
 161 python setup.py test
 162 ./build-node-docker.sh
 163 popd
 164
 165 pushd conformance
 166 pwd
 167 ./run_test.sh
 168 popd
 169
 170 cd reference
 171 handle_python_package
 172
 173 ./build-cwl-docker.sh
 174
 175 if [[ "$UPLOAD_DOCKER" != 0 ]]; then
 176     docker push commonworkflowlanguage/cwltool_module
 177     docker push commonworkflowlanguage/cwltool
 178     docker push commonworkflowlanguage/nodejs-engine
 179 fi
 180
 181 # Setup virtualenv and build documentation.
 182
 183 virtualenv ../venv
 184 . ../venv/bin/activate
 185 python setup.py install
 186 cd ..
 187
 188 if test -d common-workflow-language.github.io ; then
 189     cd common-workflow-language.github.io
 190     git fetch
 191     git reset --hard origin/master
 192     cd ..
 193 else
 194     git clone git@github.com:common-workflow-language/common-workflow-language.github.io.git
 195     cd common-workflow-language.github.io
 196     git config user.email "sysadmin@curoverse.com"
 197     git config user.name "Curoverse build bot"
 198     cd ..
 199 fi
 200 python -mcwltool specification/cwlsite.cwl specification/cwlsite-job.json --outdir=$PWD/common-workflow-language.github.io
 201 cd common-workflow-language.github.io
 202 git add --all
 203 git diff-index --quiet HEAD || git commit -m"Build bot"
 204 git push