jenkins/run-cwl-test.sh

   1 #!/bin/bash
   2
   3 # Copyright (C) The Arvados Authors. All rights reserved.
   4 #
   5 # SPDX-License-Identifier: AGPL-3.0
   6
   7 set -o pipefail
   8
   9 DEBUG=0
  10 SSH_PORT=22
  11 ACCT=ci
  12
  13 function usage {
  14     echo >&2
  15     echo >&2 "usage: $0 [options] <identifier>"
  16     echo >&2
  17     echo >&2 "   <identifier>                 Arvados cluster name"
  18     echo >&2
  19     echo >&2 "$0 options:"
  20     echo >&2 "  -p, --port <ssh port>         SSH port to use (default 22)"
  21     echo >&2 "      --acct <username>         Account to log in with"
  22     echo >&2 "  -d, --debug                   Enable debug output"
  23     echo >&2 "  -h, --help                    Display this help and exit"
  24     echo >&2
  25     echo >&2 " Required scope for the token used to run the tests:"
  26     echo >&2
  27     echo >&2 " arv api_client_authorization create_system_auth     --scopes "
  28     echo >&2 "[\"GET /arvados/v1/virtual_machines\","
  29     echo >&2 "\"GET /arvados/v1/keep_services\","
  30     echo >&2 "\"GET /arvados/v1/keep_services/\","
  31     echo >&2 "\"GET /arvados/v1/groups\","
  32     echo >&2 "\"GET /arvados/v1/groups/\","
  33     echo >&2 "\"GET /arvados/v1/links\","
  34     echo >&2 "\"GET /arvados/v1/collections\","
  35     echo >&2 "\"POST /arvados/v1/collections\","
  36     echo >&2 "\"POST /arvados/v1/links\","
  37     echo >&2 "\"GET /arvados/v1/users/current\","
  38     echo >&2 "\"POST /arvados/v1/users/current\","
  39     echo >&2 "\"GET /arvados/v1/jobs\","
  40     echo >&2 "\"POST /arvados/v1/jobs\","
  41     echo >&2 "\"GET /arvados/v1/pipeline_instances\","
  42     echo >&2 "\"GET /arvados/v1/pipeline_instances/\","
  43     echo >&2 "\"POST /arvados/v1/pipeline_instances\","
  44     echo >&2 "\"GET /arvados/v1/collections/\","
  45     echo >&2 "\"POST /arvados/v1/collections/\","
  46     echo >&2 "\"GET /arvados/v1/container_requests\","
  47     echo >&2 "\"GET /arvados/v1/container_requests/\","
  48     echo >&2 "\"POST /arvados/v1/container_requests\","
  49     echo >&2 "\"POST /arvados/v1/container_requests/\","
  50     echo >&2 "\"GET /arvados/v1/containers\","
  51     echo >&2 "\"GET /arvados/v1/containers/\","
  52     echo >&2 "\"GET /arvados/v1/logs\" ]"
  53     echo >&2
  54 }
  55
  56 # NOTE: This requires GNU getopt (part of the util-linux package on Debian-based distros).
  57 TEMP=`getopt -o hdp: \
  58     --long help,debug,port:,acct: \
  59     -n "$0" -- "$@"`
  60
  61 if [ $? != 0 ] ; then echo "Use -h for help"; exit 1 ; fi
  62 # Note the quotes around `$TEMP': they are essential!
  63 eval set -- "$TEMP"
  64
  65 while [ $# -ge 1 ]
  66 do
  67     case $1 in
  68         -p | --port)
  69             SSH_PORT="$2"; shift 2
  70             ;;
  71         --acct)
  72             ACCT="$2"; shift 2
  73             ;;
  74         -d | --debug)
  75             DEBUG=1
  76             shift
  77             ;;
  78         --)
  79             shift
  80             break
  81             ;;
  82         *)
  83             usage
  84             exit 1
  85             ;;
  86     esac
  87 done
  88
  89 IDENTIFIER=$1
  90
  91 if [[ "$IDENTIFIER" == '' ]]; then
  92   usage
  93   exit 1
  94 fi
  95
  96 EXITCODE=0
  97
  98 COLUMNS=80
  99
 100 PUPPET_AGENT='
 101 now() { date +%s; }
 102 let endtime="$(now) + 600"
 103 while [ "$endtime" -gt "$(now)" ]; do
 104     puppet agent --test --detailed-exitcodes
 105     agent_exitcode=$?
 106     if [ 0 = "$agent_exitcode" ] || [ 2 = "$agent_exitcode" ]; then
 107         break
 108     else
 109         sleep 10s
 110     fi
 111 done
 112 exit ${agent_exitcode:-99}
 113 '
 114
 115 title () {
 116   date=`date +'%Y-%m-%d %H:%M:%S'`
 117   printf "%s\n" "$date $1"
 118 }
 119
 120 function run_command() {
 121   node=$1
 122   return_var=$2
 123   command=$3
 124
 125   title "Running '${command/ARVADOS_API_TOKEN=*/ARVADOS_API_TOKEN=suppressed}' on $node"
 126   TMP_FILE=`mktemp`
 127   if [[ "$DEBUG" != "0" ]]; then
 128     ssh -t -p$SSH_PORT -o "StrictHostKeyChecking no" -o "ConnectTimeout 125" $ACCT@$node -C "$command" | tee $TMP_FILE
 129     ECODE=$?
 130   else
 131     ssh -t -p$SSH_PORT -o "StrictHostKeyChecking no" -o "ConnectTimeout 125" $ACCT@$node -C "$command" > $TMP_FILE 2>&1
 132     ECODE=$?
 133   fi
 134
 135   if [[ "$ECODE" != "255" && "$ECODE" != "0"  ]]; then
 136     # Ssh exists 255 if the connection timed out. Just ignore that, it's possible that this node is
 137     #   a shell node that is down.
 138     title "ERROR running command on $node: exit code $ECODE"
 139     if [[ "$DEBUG" == "0" ]]; then
 140       title "Command output follows:"
 141       cat $TMP_FILE
 142     fi
 143   fi
 144   if [[ "$ECODE" == "255" ]]; then
 145     title "Connection denied or timed out"
 146   fi
 147   rm -f $TMP_FILE
 148   eval "$return_var=$ECODE"
 149 }
 150
 151 title "Loading ARVADOS_API_HOST and ARVADOS_API_TOKEN"
 152 if [[ -f "$HOME/.config/arvados/$IDENTIFIER.arvadosapi.com.conf" ]]; then
 153   . $HOME/.config/arvados/$IDENTIFIER.arvadosapi.com.conf
 154 else
 155   title "WARNING: $HOME/.config/arvados/$IDENTIFIER.arvadosapi.com.conf not found."
 156 fi
 157 if [[ "$ARVADOS_API_HOST" == "" ]] || [[ "$ARVADOS_API_TOKEN" == "" ]]; then
 158   title "ERROR: ARVADOS_API_HOST and/or ARVADOS_API_TOKEN environment variables are not set."
 159   exit 1
 160 fi
 161
 162 run_command shell.$IDENTIFIER ECODE "if [[ ! -e common-workflow-language ]]; then git clone --depth 1 https://github.com/common-workflow-language/common-workflow-language.git; fi"
 163
 164 if [[ "$ECODE" != "0" ]]; then
 165   echo "Failed to git clone --depth 1 https://github.com/common-workflow-language/common-workflow-language.git"
 166   exit $ECODE
 167 fi
 168
 169 run_command shell.$IDENTIFIER ECODE "if [[ ! -e arvados-cwl-runner-with-checksum.sh ]]; then printf \"%s\n%s\n\" '#!/bin/sh' 'exec arvados-cwl-runner --compute-checksum \"\$@\"' > arvados-cwl-runner-with-checksum.sh; chmod 755 arvados-cwl-runner-with-checksum.sh; fi"
 170
 171 if [[ "$ECODE" != "0" ]]; then
 172   echo "Failed to create ~$ACCT/arvados-cwl-runner-with-checksum.sh"
 173   exit $ECODE
 174 fi
 175
 176 run_command shell.$IDENTIFIER ECODE "cd common-workflow-language; git pull; ARVADOS_API_HOST=$ARVADOS_API_HOST ARVADOS_API_TOKEN=$ARVADOS_API_TOKEN ./run_test.sh RUNNER=/home/$ACCT/arvados-cwl-runner-with-checksum.sh "
 177
 178 run_command shell.$IDENTIFIER ECODE "if [[ ! -e arvados ]]; then ARVADOS_API_HOST=$ARVADOS_API_HOST ARVADOS_API_TOKEN=$ARVADOS_API_TOKEN git clone --depth 1 https://git.$IDENTIFIER.arvadosapi.com/arvados.git; fi"
 179
 180 if [[ "$ECODE" != "0" ]]; then
 181   echo "Failed to git clone --depth 1 git@git.$IDENTIFIER.arvadosapi.com:arvados.git"
 182   exit $ECODE
 183 fi
 184
 185 run_command shell.$IDENTIFIER ECODE "cd arvados/sdk/cwl/tests; git pull; ARVADOS_API_HOST=$ARVADOS_API_HOST ARVADOS_API_TOKEN=$ARVADOS_API_TOKEN ./arvados-tests.sh"
 186
 187 exit $ECODE