Starting the lesson.

[rnaseq-cwl-training.git] / README.md

diff --git a/README b/README.md
similarity index 64%
rename from README
rename to README.md
index 5a995d4065ff48b77d56206c0786b31a670ce5b6..fd9a63026fc5d14ca5207befa46cbdb689afa16e 100644 (file)
--- a/README
+++ b/README.md
@@ -1,3 +1,21 @@
+
+# Downloading reference data
+
+```
+mkdir rnaseq
+cd rnaseq
+wget --mirror --no-parent --no-host --cut-dirs=1 https://download.pirca.arvadosapi.com/c=pirca-4zz18-sa9s62lzc00jeds/
+```
+
+# Building the Docker image
+
+```
+cd dockerfile
+docker build -t cwl-training-rnaseq-tools .
+```
+
+# Acknowledgements
+
 These CWL lessons are based on "Introduction to RNA-seq using
 high-performance computing (HPC)" lessons developed by members of the
 teaching team at the Harvard Chan Bioinformatics Core (HBC) and