Starting the lesson.

[rnaseq-cwl-training.git] / README.md

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+
+# Downloading reference data
+
+```
+mkdir rnaseq
+cd rnaseq
+wget --mirror --no-parent --no-host --cut-dirs=1 https://download.pirca.arvadosapi.com/c=pirca-4zz18-sa9s62lzc00jeds/
+```
+
+# Building the Docker image
+
+```
+cd dockerfile
+docker build -t cwl-training-rnaseq-tools .
+```
+
+# Acknowledgements
+
+These CWL lessons are based on "Introduction to RNA-seq using
+high-performance computing (HPC)" lessons developed by members of the
+teaching team at the Harvard Chan Bioinformatics Core (HBC) and
+obtained from
+
+https://github.com/hbctraining/Intro-to-rnaseq-hpc-O2
+
+The original lessons are open access materials distributed under the
+terms of the Creative Commons Attribution license (CC BY 4.0), which
+permits unrestricted use, distribution, and reproduction in any
+medium, provided the original author and source are credited.