lesson4/answers/part2/main.cwl

   1 cwlVersion: v1.2
   2 class: Workflow
   3 label: RNAseq CWL practice workflow
   4
   5 ### 2. Scattering
   6 inputs:
   7   fq: File[]
   8   genome: Directory
   9   gtf: File
  10
  11 steps:
  12   alignment:
  13     run: alignment.cwl
  14     scatter: fq
  15     in:
  16       fq: fq
  17       genome: genome
  18       gtf: gtf
  19     out: [qc_html, bam_sorted_indexed, featurecounts]
  20
  21 outputs:
  22   qc_html:
  23     type: File[]
  24     outputSource: alignment/qc_html
  25   bam_sorted_indexed:
  26     type: File[]
  27     outputSource: alignment/bam_sorted_indexed
  28   featurecounts:
  29     type: File[]
  30     outputSource: alignment/featurecounts
  31
  32 requirements:
  33   SubworkflowFeatureRequirement: {}
  34   ScatterFeatureRequirement: {}