lesson4/answers/part1/main.cwl

   1 cwlVersion: v1.2
   2 class: Workflow
   3 label: RNAseq CWL practice workflow
   4
   5 inputs:
   6   fq: File
   7   genome: Directory
   8   gtf: File
   9
  10 ### 1. Subworkflows
  11 steps:
  12   alignment:
  13     run: alignment.cwl
  14     in:
  15       fq: fq
  16       genome: genome
  17       gtf: gtf
  18     out: [qc_html, bam_sorted_indexed, featurecounts]
  19
  20 outputs:
  21   qc_html:
  22     type: File
  23     outputSource: alignment/qc_html
  24   bam_sorted_indexed:
  25     type: File
  26     outputSource: alignment/bam_sorted_indexed
  27   featurecounts:
  28     type: File
  29     outputSource: alignment/featurecounts
  30
  31 requirements:
  32   SubworkflowFeatureRequirement: {}