projects
/
rnaseq-cwl-training.git
/ blob
38ace83f9e9b6cac8829d2dbd142dc4ffe6eeb0c
[rnaseq-cwl-training.git]
/
lesson4
/
answers
/
part4
/
featureCounts.cwl
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cwlVersion: v1.2
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class: CommandLineTool
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### 4. Combining results
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inputs:
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gtf: File
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counts_input_bam:
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- File
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- File[]
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baseCommand: featureCounts
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arguments: [-T, $(runtime.cores),
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-a, $(inputs.gtf),
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-o, featurecounts.tsv,
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$(inputs.counts_input_bam)]
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outputs:
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featurecounts:
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type: File
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outputBinding:
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glob: featurecounts.tsv
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hints:
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DockerRequirement:
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dockerPull: quay.io/biocontainers/subread:1.5.0p3--0