3 label: RNAseq CWL practice workflow
12 run: bio-cwl-tools/fastqc/fastqc_2.cwl
18 # 4. Setting runtime RAM requirements
22 run: bio-cwl-tools/STAR/STAR-Align.cwl
24 RunThreadN: {default: 4}
27 OutSAMtype: {default: BAM}
28 OutSAMunmapped: {default: Within}
32 run: bio-cwl-tools/samtools/samtools_index.cwl
34 bam_sorted: STAR/alignment
35 out: [bam_sorted_indexed]
40 outputSource: fastqc/html_file
43 outputSource: samtools/bam_sorted_indexed