git.arvados.org - lightning.git/history

2021-09-09	Tom Clegg	Use callbacks in struct instead of args to Load*().	blob \| commitdiff \| raw
2021-09-01	Tom Clegg	Fix missed TranslatePaths and unreported error.	blob \| commitdiff \| raw \| diff to current
2021-08-31	Tom Clegg	Add -p-value and -cases options for exporting hgvs...	blob \| commitdiff \| raw \| diff to current
2021-08-12	Tom Clegg	Fix array index out of bounds.	blob \| commitdiff \| raw \| diff to current
2021-08-11	Tom Clegg	Export hgvs one-hot numpy: -1 for missing / low quality...	blob \| commitdiff \| raw \| diff to current
2021-08-10	Tom Clegg	Add filter options to export cmd.	blob \| commitdiff \| raw \| diff to current
2021-08-10	Tom Clegg	Memory tweaks.	blob \| commitdiff \| raw \| diff to current
2021-08-06	Tom Clegg	Add copyright headers.	blob \| commitdiff \| raw \| diff to current
2021-08-06	Tom Clegg	Reduce memory use, Limit goroutines when exporting...	blob \| commitdiff \| raw \| diff to current
2021-08-03	Tom Clegg	Reduce lock contention.	blob \| commitdiff \| raw \| diff to current
2021-08-03	Tom Clegg	Write annotations through to conserve memory.	blob \| commitdiff \| raw \| diff to current
2021-08-02	Tom Clegg	Export hgvs one-hot numpy.	blob \| commitdiff \| raw \| diff to current
2021-07-30	Tom Clegg	Use tsv filename when using tab separator.	blob \| commitdiff \| raw \| diff to current
2021-07-29	Tom Clegg	Track which tile variants each hgvs.Variant appeared in.	blob \| commitdiff \| raw \| diff to current
2021-07-15	Tom Clegg	Skip diffs on long ref seqs.	blob \| commitdiff \| raw \| diff to current
2021-07-13	Tom Clegg	Compress export output.	blob \| commitdiff \| raw \| diff to current
2021-07-13	Tom Clegg	Fix up VCF format.	blob \| commitdiff \| raw \| diff to current
2021-07-12	Tom Clegg	Fix recomputing diffs N times.	blob \| commitdiff \| raw \| diff to current
2021-07-12	Tom Clegg	Separate pvcf/vcf output.	blob \| commitdiff \| raw \| diff to current
2021-07-09	Tom Clegg	Progress indicator for exportSeq.	blob \| commitdiff \| raw \| diff to current
2021-07-09	Tom Clegg	Improve concurrency in export-diff.	blob \| commitdiff \| raw \| diff to current
2021-07-08	Tom Clegg	Fix missing output.	blob \| commitdiff \| raw \| diff to current
2021-07-08	Tom Clegg	Use more cpus.	blob \| commitdiff \| raw \| diff to current
2021-07-08	Tom Clegg	Fix use of nil writer.	blob \| commitdiff \| raw \| diff to current
2021-07-08	Tom Clegg	Enable network access to get port forwarding.	blob \| commitdiff \| raw \| diff to current
2021-07-08	Tom Clegg	Option to export one vcf/csv file per chromosome.	blob \| commitdiff \| raw \| diff to current
2021-05-25	Tom Clegg	Bring memory back down.	blob \| commitdiff \| raw \| diff to current
2021-05-24	Tom Clegg	Limit tile size in export.	blob \| commitdiff \| raw \| diff to current
2021-05-21	Tom Clegg	Save runtime profile data periodically.	blob \| commitdiff \| raw \| diff to current
2021-05-20	Tom Clegg	Don't try to buffer/sort export.	blob \| commitdiff \| raw \| diff to current
2021-05-19	Tom Clegg	More memory, but release buffers.	blob \| commitdiff \| raw \| diff to current
2021-05-18	Tom Clegg	Manage export memory.	blob \| commitdiff \| raw \| diff to current
2021-05-11	Tom Clegg	Avoid buffering entire output in memory.	blob \| commitdiff \| raw \| diff to current
2021-05-07	Tom Clegg	Export hgvs-onehot.	blob \| commitdiff \| raw \| diff to current
2021-03-04	Tom Clegg	Bump export RAM.	blob \| commitdiff \| raw \| diff to current
2021-03-01	Tom Clegg	Throttle goroutines and unflushed bufs to NCPUs.	blob \| commitdiff \| raw \| diff to current
2021-02-08	Tom Clegg	Move command line tool to subdir.	blob \| commitdiff \| raw \| diff to current
2020-11-19	Tom Clegg	Fix divide by zero.	blob \| commitdiff \| raw \| diff to current
2020-11-13	Tom Clegg	Gzip gob files.	blob \| commitdiff \| raw \| diff to current
2020-11-12	Tom Clegg	When not saving incomplete tilevars, still save hashes...	blob \| commitdiff \| raw \| diff to current
2020-10-26	Tom Clegg	Continue loop a bit earlier.	blob \| commitdiff \| raw \| diff to current
2020-10-22	Tom Clegg	Fix coverage score.	blob \| commitdiff \| raw \| diff to current
2020-10-22	Tom Clegg	More RAM for export.	blob \| commitdiff \| raw \| diff to current
2020-10-22	Tom Clegg	Split big func.	blob \| commitdiff \| raw \| diff to current
2020-10-22	Tom Clegg	Assemble sequences concurrently.	blob \| commitdiff \| raw \| diff to current
2020-10-22	Tom Clegg	Fix chr pos after chr1.	blob \| commitdiff \| raw \| diff to current
2020-10-21	Tom Clegg	Handle N in ref.	blob \| commitdiff \| raw \| diff to current
2020-10-21	Tom Clegg	Export bed file.	blob \| commitdiff \| raw \| diff to current
2020-10-20	Tom Clegg	Export VCF-ish.	blob \| commitdiff \| raw \| diff to current

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