Fix chr pos after chr1.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>

diff --git a/export.go b/export.go
index 2c51ff3eb915515b9fdd74cec837ead1cc17c611..7d3e2ec11c58954a16d66a556138b327bcbb5568 100644 (file)
--- a/export.go
+++ b/export.go
@@ -271,8 +271,8 @@ func (cmd *exporter) export(out, bedout io.Writer, librdr io.Reader, taglen int,
                return fmt.Errorf("%d needed tiles are missing from library", len(missing))
        }
 
-       refpos := 0
        for _, seqname := range seqnames {
+               refpos := 0
                variantAt := map[int][]hgvs.Variant{} // variantAt[chromOffset][genomeIndex*2+phase]
                for refstep, libref := range refseq[seqname] {
                        reftile := tileVariant[libref]