git.arvados.org - lightning.git/history

2022-07-15	Tom Clegg	Add test for variant at right end of spanning tile.	blob \| commitdiff \| raw
2022-07-15	Tom Clegg	Generate annotations for spanning tiles.	blob \| commitdiff \| raw \| diff to current
2022-07-14	Tom Clegg	Update tests.	blob \| commitdiff \| raw \| diff to current
2022-07-01	Tom Clegg	Fix low-coverage tiles counting toward min coverage...	blob \| commitdiff \| raw \| diff to current
2022-04-29	Tom Clegg	Add -log10(pvalue) row to onehot-columns.npy output...	blob \| commitdiff \| raw \| diff to current
2022-02-18	Tom Clegg	Add -debug-tag flag.	blob \| commitdiff \| raw \| diff to current
2022-02-17	Tom Clegg	Update tests (don't include both het+hom if only one...	blob \| commitdiff \| raw \| diff to current
2022-02-04	Tom Clegg	Update logged stats.	blob \| commitdiff \| raw \| diff to current
2022-01-31	Tom Clegg	Add dump command.	blob \| commitdiff \| raw \| diff to current
2022-01-27	Tom Clegg	Output -single-onehot as coordinates of non-zero values.	blob \| commitdiff \| raw \| diff to current
2022-01-21	Tom Clegg	Fix Χ² calculation.	blob \| commitdiff \| raw \| diff to current
2022-01-17	Tom Clegg	Add -single-onehot output option.	blob \| commitdiff \| raw \| diff to current
2022-01-14	Tom Clegg	Load case/control/neither from csv column, fix Χ² filter.	blob \| commitdiff \| raw \| diff to current
2022-01-13	Tom Clegg	Add -chunked-onehot option.	blob \| commitdiff \| raw \| diff to current
2022-01-07	Tom Clegg	Filter HGVS columns by coverage & p-value threshold.	blob \| commitdiff \| raw \| diff to current
2021-12-30	Tom Clegg	Fix blocking on gob encode.	blob \| commitdiff \| raw \| diff to current
2021-11-24	Tom Clegg	Option to merge matrices and annotations.	blob \| commitdiff \| raw \| diff to current
2021-11-22	Tom Clegg	Implement -regions and -expand-regions for slice-numpy.	blob \| commitdiff \| raw \| diff to current
2021-11-04	Tom Clegg	Fix variant numbering.	blob \| commitdiff \| raw \| diff to current
2021-11-01	Tom Clegg	Update slice-numpy test.	blob \| commitdiff \| raw \| diff to current
2021-09-23	Tom Clegg	Accept multiple input libraries for slice→slicenumpy.	blob \| commitdiff \| raw \| diff to current
2021-09-17	Tom Clegg	Renumber variants by allele count.	blob \| commitdiff \| raw \| diff to current
2021-09-17	Tom Clegg	Fix reference assembly.	blob \| commitdiff \| raw \| diff to current
2021-09-13	Tom Clegg	Slice imported data by tag#.	blob \| commitdiff \| raw \| diff to current

RSS Atom