} {
c.Check(string(annotations), check.Matches, "(?ms).*"+s+".*")
}
+
+ annotations, err = ioutil.ReadFile(npydir + "/matrix.0002.annotations.csv")
+ c.Assert(err, check.IsNil)
+ c.Logf("%s", annotations)
+ for _, s := range []string{
+ ",2,chr2:g.1_3delinsAAA",
+ ",2,chr2:g.125_127delinsAAA",
+ ",4,chr2:g.125_127delinsAAA",
+ } {
+ c.Check(string(annotations), check.Matches, "(?ms).*"+s+".*")
+ }
}
>chr2
tttttatagcagtagcggttgcgataatgcgcactaaggtggccataacttagccacacagactgcgacctcggtgtcaatctttaggcgatgactagtg
gttattaataataacttatcatca
-aaaccggggaaactagcgtaaaaaccgccgtcgcagtataccaccttatacctgtgccactcaatacaggagttgctcagcccaagacaccaacgactaa
+AAAccggggaaactagcgtaaaaaccgccgtcgcagtataccaccttatacctgtgccactcaatacaggagttgctcagcccaagacaccaacgactaa
gctctcaaaccttgtatttttctt
atgtcctcgcttggattatggggactcgcagtaaatgacaaccgtgcccgctggccctggccggaccgcgcgtccgtaagtagcgatcgagtcctgcagt
aaaactgatccaaaaaaaatacaa
cctcccgagccgagccacccgtca
tgatagccatcccgcacctagcgcacggaacttcgaccgatcccatattaacgtgtctcttatcctcccgctactgcgtgccttgccactcgtttactat
>chr2
-aaattatagcagtagcggttgcgataatgcgcactaaggtggccataacttagccacacagactgcgacctcggtgtcaatctttaggcgatgactagtg
+AAAttatagcagtagcggttgcgataatgcgcactaaggtggccataacttagccacacagactgcgacctcggtgtcaatctttaggcgatgactagtg
gttattaataataacttatcatca
-aaaccggggaaactagcgtaaaaaccgccgtcgcagtataccaccttatacctgtgccactcaatacaggagttgctcagcccaagacaccaacgactaa
+AAAccggggaaactagcgtaaaaaccgccgtcgcagtataccaccttatacctgtgccactcaatacaggagttgctcagcccaagacaccaacgactaa
gctctcaaaccttgtatttttctt
atgtcctcgcttggattatggggactcgcagtaaatgacaaccgtgcccgctggccctggccggaccgcgcgtccgtaagtagcgatcgagtcctgcagt
aaaactgatccaaaaaaaatacaa