Update slice-numpy test.

refs #17763

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

diff --git a/slice_test.go b/slice_test.go
index 532b7bb2e5b1653223faf3d20a986cb66ccd8657..42bceee9b870a054e084fc5dcfd5c10450c320c3 100644 (file)
--- a/slice_test.go
+++ b/slice_test.go
@@ -112,4 +112,15 @@ func (s *sliceSuite) TestImportAndSlice(c *check.C) {
        } {
                c.Check(string(annotations), check.Matches, "(?ms).*"+s+".*")
        }
+
+       annotations, err = ioutil.ReadFile(npydir + "/matrix.0002.annotations.csv")
+       c.Assert(err, check.IsNil)
+       c.Logf("%s", annotations)
+       for _, s := range []string{
+               ",2,chr2:g.1_3delinsAAA",
+               ",2,chr2:g.125_127delinsAAA",
+               ",4,chr2:g.125_127delinsAAA",
+       } {
+               c.Check(string(annotations), check.Matches, "(?ms).*"+s+".*")
+       }
 }

diff --git a/testdata/pipeline1/input2.1.fasta b/testdata/pipeline1/input2.1.fasta
index 4b2b537e0fdef3774d850aa0e7e08aebf1a29a36..a0798ca734994a9478d70f8654ccfadaf061898d 100644 (file)
--- a/testdata/pipeline1/input2.1.fasta
+++ b/testdata/pipeline1/input2.1.fasta
@@ -11,7 +11,7 @@ tgatagccatcccgcacctagcgcacggaacttcgaccgatcccatattaacgtgtctcttatcctcccgctactgcgtg
 >chr2
 tttttatagcagtagcggttgcgataatgcgcactaaggtggccataacttagccacacagactgcgacctcggtgtcaatctttaggcgatgactagtg
 gttattaataataacttatcatca
-aaaccggggaaactagcgtaaaaaccgccgtcgcagtataccaccttatacctgtgccactcaatacaggagttgctcagcccaagacaccaacgactaa
+AAAccggggaaactagcgtaaaaaccgccgtcgcagtataccaccttatacctgtgccactcaatacaggagttgctcagcccaagacaccaacgactaa
 gctctcaaaccttgtatttttctt
 atgtcctcgcttggattatggggactcgcagtaaatgacaaccgtgcccgctggccctggccggaccgcgcgtccgtaagtagcgatcgagtcctgcagt
 aaaactgatccaaaaaaaatacaa

diff --git a/testdata/pipeline1/input2.2.fasta b/testdata/pipeline1/input2.2.fasta
index 3cb4412cab35aaa0921f681fe6f44ce71d369de3..5e5b93d77e48f8d1e634dc6181627fda7df0c849 100644 (file)
--- a/testdata/pipeline1/input2.2.fasta
+++ b/testdata/pipeline1/input2.2.fasta
@@ -9,9 +9,9 @@ aaggtttatattcagtcgaaatggacgggtcccgaacttgcacggacctaacgggactcgcctttcgtaataaccgaacc
 cctcccgagccgagccacccgtca
 tgatagccatcccgcacctagcgcacggaacttcgaccgatcccatattaacgtgtctcttatcctcccgctactgcgtgccttgccactcgtttactat
 >chr2
-aaattatagcagtagcggttgcgataatgcgcactaaggtggccataacttagccacacagactgcgacctcggtgtcaatctttaggcgatgactagtg
+AAAttatagcagtagcggttgcgataatgcgcactaaggtggccataacttagccacacagactgcgacctcggtgtcaatctttaggcgatgactagtg
 gttattaataataacttatcatca
-aaaccggggaaactagcgtaaaaaccgccgtcgcagtataccaccttatacctgtgccactcaatacaggagttgctcagcccaagacaccaacgactaa
+AAAccggggaaactagcgtaaaaaccgccgtcgcagtataccaccttatacctgtgccactcaatacaggagttgctcagcccaagacaccaacgactaa
 gctctcaaaccttgtatttttctt
 atgtcctcgcttggattatggggactcgcagtaaatgacaaccgtgcccgctggccctggccggaccgcgcgtccgtaagtagcgatcgagtcctgcagt
 aaaactgatccaaaaaaaatacaa