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Include HGVS IDs in anno2vcf.
[lightning.git]
/
slicenumpy.go
2021-12-02
Tom Clegg
Add null csv rows for ref/undiffed. Ensure 0 means...
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2021-11-30
Tom Clegg
Not a bug when ref is the only variant loaded.
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2021-11-27
Tom Clegg
Mention undiffable variants in annotations, write ...
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2021-11-26
Tom Clegg
Write hgvs-oriented matrix and annotations csv.
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2021-11-26
Tom Clegg
Log exact locations of duplicate tags.
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2021-11-25
Tom Clegg
Drop duplicate tags, fix ref position tracking.
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2021-11-25
Tom Clegg
More debug messages and error checks.
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2021-11-24
Tom Clegg
Option to merge matrices and annotations.
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2021-11-22
Tom Clegg
Implement -regions and -expand-regions for slice-numpy.
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2021-11-04
Tom Clegg
Fix variant numbering.
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2021-11-01
Tom Clegg
Fix duplicate entries in slice-numpy annotations.
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2021-11-01
Tom Clegg
Avoid empty "ref" field in anno2vcf output.
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2021-10-28
Tom Clegg
Bump slice-numpy memory.
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2021-10-28
Tom Clegg
Add anno2vcf command.
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2021-10-06
Tom Clegg
Implement -match-genome filter.
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2021-10-06
Tom Clegg
Save all ref tile data in slice 0.
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2021-09-25
Tom Clegg
Improve logging.
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2021-09-25
Tom Clegg
Tweak cpu/mem usage.
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2021-09-23
Tom Clegg
Accept multiple input libraries for slice→slicenumpy.
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2021-09-20
Tom Clegg
Fix array index out of bounds.
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2021-09-17
Tom Clegg
Renumber variants by allele count.
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2021-09-17
Tom Clegg
Fix reference assembly.
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2021-09-14
Tom Clegg
Fix mem usage, improve logging.
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2021-09-13
Tom Clegg
Generate annotations for slices.
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2021-09-13
Tom Clegg
Generate numpy matrices from slices.
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