git.arvados.org - lightning.git/history

2022-01-17	Tom Clegg	Use native client to read annotations.csv.	blob \| commitdiff \| raw
2021-11-22	Tom Clegg	Implement -regions and -expand-regions for slice-numpy.	blob \| commitdiff \| raw \| diff to current
2021-09-09	Tom Clegg	Use callbacks in struct instead of args to Load*().	blob \| commitdiff \| raw \| diff to current
2021-08-12	Tom Clegg	Fix unchecked error.	blob \| commitdiff \| raw \| diff to current
2021-08-10	Tom Clegg	Add filter options to export cmd.	blob \| commitdiff \| raw \| diff to current
2021-08-06	Tom Clegg	Add copyright headers.	blob \| commitdiff \| raw \| diff to current
2021-06-17	Tom Clegg	Split sequence data into 64K independently locked parti...	blob \| commitdiff \| raw \| diff to current
2021-06-17	Tom Clegg	Add concurrent load to exportnumpy.	blob \| commitdiff \| raw \| diff to current
2021-06-15	Tom Clegg	Add "flake" command (read, tidy, write).	blob \| commitdiff \| raw \| diff to current
2021-06-14	Tom Clegg	Adjust memory.	blob \| commitdiff \| raw \| diff to current
2021-06-14	Tom Clegg	Write hgvs-based numpy matrix.	blob \| commitdiff \| raw \| diff to current
2021-05-07	Tom Clegg	Export hgvs-onehot.	blob \| commitdiff \| raw \| diff to current
2021-04-26	Tom Clegg	Bump exportnumpy memory.	blob \| commitdiff \| raw \| diff to current
2021-04-12	Tom Clegg	Bump exportnumpy memory.	blob \| commitdiff \| raw \| diff to current
2021-04-01	Tom Clegg	Add -expand-regions flag.	blob \| commitdiff \| raw \| diff to current
2021-03-24	Tom Clegg	Export selected regions.	blob \| commitdiff \| raw \| diff to current
2021-03-15	Tom Clegg	Test numpy annotations.	blob \| commitdiff \| raw \| diff to current
2021-03-11	Tom Clegg	Option to write numpy in chunks (same rows, fewer columns).	blob \| commitdiff \| raw \| diff to current
2021-02-08	Tom Clegg	Move command line tool to subdir.	blob \| commitdiff \| raw \| diff to current
2021-01-29	Tom Clegg	Log exported numpy shape.	blob \| commitdiff \| raw \| diff to current
2020-12-17	Tom Clegg	Bump exportnumpy memory.	blob \| commitdiff \| raw \| diff to current
2020-12-16	Tom Clegg	Sort rows by label shown in csv, not full file path.	blob \| commitdiff \| raw \| diff to current
2020-12-04	Tom Clegg	Include numpy matrix filename in labels csv.	blob \| commitdiff \| raw \| diff to current
2020-12-04	Tom Clegg	More memory + direct Keep access for merge and exportnumpy.	blob \| commitdiff \| raw \| diff to current
2020-11-25	Tom Clegg	Export labels.csv with numpy array.	blob \| commitdiff \| raw \| diff to current
2020-11-19	Tom Clegg	Indicate low quality tile variants with -1 in numpy...	blob \| commitdiff \| raw \| diff to current
2020-11-13	Tom Clegg	Gzip gob files.	blob \| commitdiff \| raw \| diff to current
2020-11-12	Tom Clegg	When not saving incomplete tilevars, still save hashes...	blob \| commitdiff \| raw \| diff to current
2020-11-05	Tom Clegg	Renumber/prune variants for numpy export.	blob \| commitdiff \| raw \| diff to current
2020-11-02	Tom Clegg	Adjust speed knobs.	blob \| commitdiff \| raw \| diff to current
2020-11-02	Tom Clegg	Propagate filters to container.	blob \| commitdiff \| raw \| diff to current
2020-11-01	Tom Clegg	Write annotations along with numpy.	blob \| commitdiff \| raw \| diff to current
2020-10-31	Tom Clegg	Use tilelib to load for export and pca.	blob \| commitdiff \| raw \| diff to current
2020-09-18	Tom Clegg	More logs.	blob \| commitdiff \| raw \| diff to current
2020-09-17	Tom Clegg	Do PCA in Go.	blob \| commitdiff \| raw \| diff to current
2020-09-15	Tom Clegg	More memory for export-numpy.	blob \| commitdiff \| raw \| diff to current
2020-09-11	Tom Clegg	Option to recode as one-hot for numpy output.	blob \| commitdiff \| raw \| diff to current
2020-09-09	Tom Clegg	Sort numpy output by label.	blob \| commitdiff \| raw \| diff to current
2020-03-10	Tom Clegg	Container request priority flag.	blob \| commitdiff \| raw \| diff to current
2020-03-05	Tom Clegg	Less verbose logging.	blob \| commitdiff \| raw \| diff to current
2020-03-05	Tom Clegg	I/O pipeline, show arvados container logs.	blob \| commitdiff \| raw \| diff to current
2020-03-04	Tom Clegg	Fix input arg in export.	blob \| commitdiff \| raw \| diff to current
2020-03-03	Tom Clegg	Add pca subcommand.	blob \| commitdiff \| raw \| diff to current
2020-03-03	Tom Clegg	Run "filter" and "export" in arvados containers.	blob \| commitdiff \| raw \| diff to current
2020-02-04	Tom Clegg	Split gvcf2numpy command into import and export-numpy.	blob \| commitdiff \| raw \| diff to current

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