git.arvados.org - lightning.git/history

2022-01-07	Tom Clegg	Filter HGVS columns by coverage & p-value threshold.	blob \| commitdiff \| raw
2021-12-30	Tom Clegg	Fix coordinates in hgvs annotations.	blob \| commitdiff \| raw \| diff to current
2021-12-30	Tom Clegg	Fix slice padding.	blob \| commitdiff \| raw \| diff to current
2021-12-30	Tom Clegg	Fix blocking on gob encode.	blob \| commitdiff \| raw \| diff to current
2021-12-29	Tom Clegg	More aggressive GC.	blob \| commitdiff \| raw \| diff to current
2021-12-29	Tom Clegg	Fix index out of bounds error.	blob \| commitdiff \| raw \| diff to current
2021-12-29	Tom Clegg	Refactor chunked-hgvs to use less memory.	blob \| commitdiff \| raw \| diff to current
2021-12-27	Tom Clegg	Separate options to output single/chunked hgvs matrices.	blob \| commitdiff \| raw \| diff to current
2021-12-21	Tom Clegg	Bump slice-numpy memory.	blob \| commitdiff \| raw \| diff to current
2021-12-02	Tom Clegg	Add null csv rows for ref/undiffed. Ensure 0 means...	blob \| commitdiff \| raw \| diff to current
2021-11-30	Tom Clegg	Not a bug when ref is the only variant loaded.	blob \| commitdiff \| raw \| diff to current
2021-11-27	Tom Clegg	Mention undiffable variants in annotations, write ...	blob \| commitdiff \| raw \| diff to current
2021-11-26	Tom Clegg	Write hgvs-oriented matrix and annotations csv.	blob \| commitdiff \| raw \| diff to current
2021-11-26	Tom Clegg	Log exact locations of duplicate tags.	blob \| commitdiff \| raw \| diff to current
2021-11-25	Tom Clegg	Drop duplicate tags, fix ref position tracking.	blob \| commitdiff \| raw \| diff to current
2021-11-25	Tom Clegg	More debug messages and error checks.	blob \| commitdiff \| raw \| diff to current
2021-11-24	Tom Clegg	Option to merge matrices and annotations.	blob \| commitdiff \| raw \| diff to current
2021-11-22	Tom Clegg	Implement -regions and -expand-regions for slice-numpy.	blob \| commitdiff \| raw \| diff to current
2021-11-04	Tom Clegg	Fix variant numbering.	blob \| commitdiff \| raw \| diff to current
2021-11-01	Tom Clegg	Fix duplicate entries in slice-numpy annotations.	blob \| commitdiff \| raw \| diff to current
2021-11-01	Tom Clegg	Avoid empty "ref" field in anno2vcf output.	blob \| commitdiff \| raw \| diff to current
2021-10-28	Tom Clegg	Bump slice-numpy memory.	blob \| commitdiff \| raw \| diff to current
2021-10-28	Tom Clegg	Add anno2vcf command.	blob \| commitdiff \| raw \| diff to current
2021-10-06	Tom Clegg	Implement -match-genome filter.	blob \| commitdiff \| raw \| diff to current
2021-10-06	Tom Clegg	Save all ref tile data in slice 0.	blob \| commitdiff \| raw \| diff to current
2021-09-25	Tom Clegg	Improve logging.	blob \| commitdiff \| raw \| diff to current
2021-09-25	Tom Clegg	Tweak cpu/mem usage.	blob \| commitdiff \| raw \| diff to current
2021-09-23	Tom Clegg	Accept multiple input libraries for slice→slicenumpy.	blob \| commitdiff \| raw \| diff to current
2021-09-20	Tom Clegg	Fix array index out of bounds.	blob \| commitdiff \| raw \| diff to current
2021-09-17	Tom Clegg	Renumber variants by allele count.	blob \| commitdiff \| raw \| diff to current
2021-09-17	Tom Clegg	Fix reference assembly.	blob \| commitdiff \| raw \| diff to current
2021-09-14	Tom Clegg	Fix mem usage, improve logging.	blob \| commitdiff \| raw \| diff to current
2021-09-13	Tom Clegg	Generate annotations for slices.	blob \| commitdiff \| raw \| diff to current
2021-09-13	Tom Clegg	Generate numpy matrices from slices.	blob \| commitdiff \| raw \| diff to current

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