Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@tomclegg.ca>
fmt.Sprintf("-skip-ooo=%v", cmd.skipOOO),
fmt.Sprintf("-output-tiles=%v", cmd.outputTiles),
fmt.Sprintf("-save-incomplete-tiles=%v", cmd.saveIncompleteTiles),
fmt.Sprintf("-skip-ooo=%v", cmd.skipOOO),
fmt.Sprintf("-output-tiles=%v", cmd.outputTiles),
fmt.Sprintf("-save-incomplete-tiles=%v", cmd.saveIncompleteTiles),
+ "-match-chromosome", cmd.matchChromosome.String(),
"-output-stats", "/mnt/output/stats.json",
"-tag-library", cmd.tagLibraryFile,
"-ref", cmd.refFile,
"-output-stats", "/mnt/output/stats.json",
"-tag-library", cmd.tagLibraryFile,
"-ref", cmd.refFile,