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19527: Accommodate header row in samples csv.
19527-training-set
author
Tom Clegg <tom@curii.com>
Wed, 9 Nov 2022 23:29:58 +0000
(18:29 -0500)
committer
Tom Clegg <tom@curii.com>
Wed, 9 Nov 2022 23:29:58 +0000
(18:29 -0500)
Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>
plot.py
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diff --git
a/plot.py
b/plot.py
index da84cc0df242cbc903031a6bae37fbf86c2978fe..646c4d71aa02b8c3faa7fd938c9767f2d7d469c5 100644
(file)
--- a/
plot.py
+++ b/
plot.py
@@
-28,6
+28,8
@@
if samples_file:
labels = {}
with open(samples_file, 'rt', newline='') as samplelist:
for row in csv.reader(samplelist):
+ if row[0] == "Index":
+ continue
sampleid = row[1]
samples.append(sampleid)
phenotype_cat2_column = int(phenotype_cat2_column)