Remove Jiayong as Maintainer, update base images from arvados/jobs -> python:3.8...

Arvados-DCO-1.1-Signed-off-by: Alex Coleman <alex.coleman@curii.com>

diff --git a/docker/beagle5.4/Dockerfile b/docker/beagle5.4/Dockerfile
index 11656280a34d1d387b99100634353a3981c48976..8964a9ac77192f70da71b227f3a750b80488933a 100644 (file)
--- a/docker/beagle5.4/Dockerfile
+++ b/docker/beagle5.4/Dockerfile
@@ -3,7 +3,6 @@
 # SPDX-License-Identifier: AGPL-3.0
 
 FROM ubuntu:16.04
-MAINTAINER Jiayong Li <jli@curii.com>
 USER root
 
 RUN apt-get update --fix-missing -qy

diff --git a/docker/cgivar2vcfbed/Dockerfile b/docker/cgivar2vcfbed/Dockerfile
index eb8ee227abd4f03dfd60c1a016f6b0c3a20fb9d3..9ccfead79815956d741b970ca66586a94fec5335 100644 (file)
--- a/docker/cgivar2vcfbed/Dockerfile
+++ b/docker/cgivar2vcfbed/Dockerfile
@@ -2,8 +2,7 @@
 #
 # SPDX-License-Identifier: AGPL-3.0
 
-FROM arvados/jobs
-MAINTAINER Jiayong Li <jli@curii.com>
+FROM python:3.8-buster
 
 USER root
 
@@ -37,4 +36,4 @@ WORKDIR /
 
 # Installing gvcf_regions
 
-RUN git clone https://github.com/lijiayong/gvcf_regions
+RUN git clone https://github.com/acoleman2000/gvcf_regions

diff --git a/docker/lightning/Dockerfile b/docker/lightning/Dockerfile
index 061d9d45a7a09f8bd3b7f87c28bd75f30ff6063b..2941b5a06137d6d53cb509277e462c1119b40215 100644 (file)
--- a/docker/lightning/Dockerfile
+++ b/docker/lightning/Dockerfile
@@ -5,10 +5,8 @@
 # build instruction:
 # docker build -t dockername --file=/path/to/lightning/docker/lightning/Dockerfile /path/to/lightning
 
-FROM ubuntu:latest
-MAINTAINER Jiayong Li <jli@curii.com>s
+FROM python:3.8-buster
 USER root
-ARG DEBIAN_FRONTEND=noninteractive
 
 # Install necessary dependencies
 
@@ -24,8 +22,6 @@ RUN apt-get install -qy --no-install-recommends wget \
   libncursesw5-dev \
   gcc \
   make \
-  python3.8 \
-  python3-pip \
   python3-numpy \
   python3-pandas \
   python3-scipy \

diff --git a/docker/snpeff/Dockerfile b/docker/snpeff/Dockerfile
index e37c3d4cf70eacb42d6f65a362b4f9ee8d5df512..f6524b5d029ef8c0f0b2d55b8c9e9d65dbd46f46 100644 (file)
--- a/docker/snpeff/Dockerfile
+++ b/docker/snpeff/Dockerfile
@@ -3,7 +3,6 @@
 # SPDX-License-Identifier: AGPL-3.0
 
 FROM ubuntu:18.04
-MAINTAINER Jiayong Li <jli@curii.com>
 USER root
 
 # Install necessary dependencies

diff --git a/docker/vcfutil/Dockerfile b/docker/vcfutil/Dockerfile
index d3427b74ecd15f65bbada347b6491580f94c7684..db9e38015859bbe575b35d6283bbe5c8d547afa8 100644 (file)
--- a/docker/vcfutil/Dockerfile
+++ b/docker/vcfutil/Dockerfile
@@ -2,8 +2,7 @@
 #
 # SPDX-License-Identifier: AGPL-3.0
 
-FROM arvados/jobs
-MAINTAINER Jiayong Li <jli@curii.com>
+FROM python:3.8-buster
 
 USER root
 
@@ -63,4 +62,4 @@ WORKDIR /
 
 # Installing gvcf_regions
 
-RUN git clone https://github.com/lijiayong/gvcf_regions
+RUN git clone https://github.com/acoleman2000/gvcf_regions