Fix exportnumpy test.

Arvados-DCO-1.1-Signed-off-by: Tom Clegg <tom@curii.com>

diff --git a/exportnumpy_test.go b/exportnumpy_test.go
index 44b0c6609d6cd334f6a0aad94cddb8b95c1bb3a1..c556b3145b42efcc0fe29a87f561fd2d02e83b33 100644 (file)
--- a/exportnumpy_test.go
+++ b/exportnumpy_test.go
@@ -20,9 +20,9 @@ func (s *exportNumpySuite) TestFastaToNumpy(c *check.C) {
        c.Check(err, check.IsNil)
 
        var buffer bytes.Buffer
-       exited := (&importer{}).RunCommand("import", []string{"-local=true", "-tag-library", "testdata/tags", "-output-tiles", "-save-incomplete-tiles", "testdata/a.1.fasta", "testdata/tinyref.fasta"}, &bytes.Buffer{}, &buffer, os.Stderr)
+       exited := (&importer{}).RunCommand("import", []string{"-local=true", "-o", tmpdir + "/library.gob.gz", "-tag-library", "testdata/tags", "-output-tiles", "-save-incomplete-tiles", "testdata/a.1.fasta", "testdata/tinyref.fasta"}, &bytes.Buffer{}, os.Stderr, os.Stderr)
        c.Assert(exited, check.Equals, 0)
-       exited = (&exportNumpy{}).RunCommand("export-numpy", []string{"-local=true", "-output-dir", tmpdir, "-output-annotations", tmpdir + "/annotations.csv", "-regions", tmpdir + "/chr1-12-100.bed"}, &buffer, os.Stderr, os.Stderr)
+       exited = (&exportNumpy{}).RunCommand("export-numpy", []string{"-local=true", "-input-dir", tmpdir, "-output-dir", tmpdir, "-output-annotations", tmpdir + "/annotations.csv", "-regions", tmpdir + "/chr1-12-100.bed"}, &buffer, os.Stderr, os.Stderr)
        c.Check(exited, check.Equals, 0)
        f, err := os.Open(tmpdir + "/matrix.npy")
        c.Assert(err, check.IsNil)