Include numpy matrix filename in labels csv.

[lightning.git] / cmd.go

diff --git a/cmd.go b/cmd.go
index 2e59e51b76358da62fd519f9e554232cb888560b..5789fe4604d3b5f41b75215e762b89868503e821 100644 (file)
--- a/cmd.go
+++ b/cmd.go
@@ -21,9 +21,11 @@ var (
                "ref2genome":         &ref2genome{},
                "vcf2fasta":          &vcf2fasta{},
                "import":             &importer{},
+               "annotate":           &annotatecmd{},
                "export":             &exporter{},
                "export-numpy":       &exportNumpy{},
-               "filter":             &filterer{},
+               "numpy-comvar":       &numpyComVar{},
+               "filter":             &filtercmd{},
                "build-docker-image": &buildDockerImage{},
                "pca-go":             &goPCA{},
                "pca-py":             &pythonPCA{},
@@ -54,7 +56,7 @@ func (cmd *buildDockerImage) RunCommand(prog string, args []string, stdin io.Rea
 RUN DEBIAN_FRONTEND=noninteractive \
   apt-get update && \
   apt-get dist-upgrade -y && \
-  apt-get install -y --no-install-recommends bcftools bedtools samtools python2 python3-sklearn python3-matplotlib && \
+  apt-get install -y --no-install-recommends bcftools bedtools samtools python2 python3-sklearn python3-matplotlib ca-certificates && \
   apt-get clean
 `), 0644)
        if err != nil {