X-Git-Url: https://git.arvados.org/lightning.git/blobdiff_plain/395c842444856a96a4216353a201ff5f42e3ef64..149b80b48df7b0da269004b3ff5b2ce7e9dedbb6:/cmd.go

diff --git a/cmd.go b/cmd.go
index 2e59e51b76..5789fe4604 100644
--- a/cmd.go
+++ b/cmd.go
@@ -21,9 +21,11 @@ var (
 		"ref2genome":         &ref2genome{},
 		"vcf2fasta":          &vcf2fasta{},
 		"import":             &importer{},
+		"annotate":           &annotatecmd{},
 		"export":             &exporter{},
 		"export-numpy":       &exportNumpy{},
-		"filter":             &filterer{},
+		"numpy-comvar":       &numpyComVar{},
+		"filter":             &filtercmd{},
 		"build-docker-image": &buildDockerImage{},
 		"pca-go":             &goPCA{},
 		"pca-py":             &pythonPCA{},
@@ -54,7 +56,7 @@ func (cmd *buildDockerImage) RunCommand(prog string, args []string, stdin io.Rea
 RUN DEBIAN_FRONTEND=noninteractive \
   apt-get update && \
   apt-get dist-upgrade -y && \
-  apt-get install -y --no-install-recommends bcftools bedtools samtools python2 python3-sklearn python3-matplotlib && \
+  apt-get install -y --no-install-recommends bcftools bedtools samtools python2 python3-sklearn python3-matplotlib ca-certificates && \
   apt-get clean
 `), 0644)
 	if err != nil {