1 # Copyright (C) The Lightning Authors. All rights reserved.
3 # SPDX-License-Identifier: AGPL-3.0
8 ShellCommandRequirement: {}
22 secondaryFiles: [.tbi]
28 secondaryFiles: [.tbi]
29 baseCommand: [bcftools, view]
33 valueFrom: $(inputs.chr)
36 valueFrom: $(inputs.sample)_$(inputs.chr).vcf.gz
42 valueFrom: "/beagle.05May22.33a.jar"
45 valueFrom: $(inputs.ref)
48 valueFrom: $(inputs.map)
51 valueFrom: $(inputs.sample)_$(inputs.chr).vcf.gz
54 valueFrom: $(inputs.sample)_rawimputed_$(inputs.chr)
57 valueFrom: $(runtime.cores)
61 - $(inputs.sample)_rawimputed_$(inputs.chr).vcf.gz
65 - $(inputs.sample)_$(inputs.chr).vcf.gz