Merge branch '19526-manhattan-plot'
[lightning.git] / cwl / annotation / totalcounts.cwl
1 # Copyright (C) The Lightning Authors. All rights reserved.
2 #
3 # SPDX-License-Identifier: AGPL-3.0
4
5 cwlVersion: v1.1
6 class: CommandLineTool
7 hints:
8   DockerRequirement:
9     dockerPull: vcfutil
10   ResourceRequirement:
11     ramMin: 5000
12 inputs:
13   sample: string
14   counts: File[]
15   bashscript:
16     type: File
17     default:
18       class: File
19       location: src/totalcounts.sh
20 outputs:
21   summary:
22     type: stdout
23 arguments:
24   - $(inputs.bashscript)
25   - $(inputs.counts)
26 stdout: $(inputs.sample)_summary.txt