cwl/gvcf2fasta/yml/scatter-gvcf2fasta_splitvcf-imputation-wf-100test.yml

   1 # Copyright (C) The Lightning Authors. All rights reserved.
   2 #
   3 # SPDX-License-Identifier: AGPL-3.0
   4
   5 gqcutoff: 20
   6 genomebed:
   7   class: File
   8   location: keep:67b4d7e55e61cef7343f3928af97e197+54/hg38.bed
   9 ref:
  10   class: File
  11   location: keep:ee5b90cf2d5f3573e6d455ab56e15cdf+761/hg38.fa.gz
  12 chrs: ["chr1","chr2","chr3","chr4","chr5","chr6","chr7","chr8","chr9","chr10","chr11","chr12","chr13","chr14","chr15","chr16","chr17","chr18","chr19","chr20","chr21","chr22", "chrX"]
  13 refsdir:
  14   class: Directory
  15   location: keep:3a1673a2230877bfaf92b50f7376529c+10590
  16 mapsdir:
  17   class: Directory
  18   location: keep:10b1baade985c576a97dfc37d12b953b+1096
  19 panelnocallbed:
  20   class: File
  21   location: keep:f0b387cc686f227748e6d49033c3f2f0+101/HG001_GRCh38_1_22_v4.2.1_benchmark_nocall.bed
  22 panelcallbed:
  23   class: File
  24   location: keep:ea4364c48def931b8cdaf07913a3657b+94/HG001_GRCh38_1_22_v4.2.1_benchmark.bed
  25 sampleids:
  26   - "A-IIAA-IA000604-BL-NCR-14AD67907"
  27   - "A-IIAA-IA000369-BL-NCR-14AD67573"
  28   - "A-IIAA-IA000196-BL-NCR-14AD66938"
  29   - "A-IIAA-IA000194-BL-NCR-14AD66933"
  30   - "A-IIAA-IA000009-BL-NCR-14AD67102"
  31   - "A-WCAP-WC001736-BL-COL-62260BL1"
  32   - "A-WCAP-WC001725-BL-COL-62376BL1"
  33   - "A-WCAP-WC001708-BL-COL-50951BL1"
  34   - "A-WCAP-WC001695-BL-COL-46967BL1"
  35   - "A-WCAP-WC001710-BL-COL-40530BL1"
  36   - "A-WCAP-WC001720-BL-COL-62328BL1"
  37   - "A-WCAP-WC001704-BL-COL-48409BL1"
  38   - "A-WCAP-WC001702-BL-COL-45946BL1"
  39   - "A-WCAP-WC001697-BL-COL-46951BL1"
  40   - "A-WCAP-WC001699-BL-COL-55120BL1"
  41   - "A-WCAP-WC001700-BL-COL-57684BL1"
  42   - "A-WCAP-WC001696-BL-COL-50506BL1"
  43   - "A-WCAP-WC001693-BL-COL-48336BL1"
  44   - "A-WCAP-WC001683-BL-COL-49188BL1"
  45   - "A-WCAP-WC001687-BL-COL-48252BL1"
  46   - "A-WCAP-WC001694-BL-COL-45207BL1"
  47   - "A-WCAP-WC001686-BL-COL-50549BL1"
  48   - "A-WCAP-WC001691-BL-COL-46031BL1"
  49   - "A-WCAP-WC001688-BL-COL-50977BL1"
  50   - "A-WCAP-WC001684-BL-COL-47006BL1"
  51   - "A-WCAP-WC001681-BL-COL-57657BL1"
  52   - "A-WCAP-WC001682-BL-COL-47560BL1"
  53   - "A-WCAP-WC001679-BL-COL-49250BL1"
  54   - "A-WCAP-WC001672-BL-COL-45187BL1"
  55   - "A-WCAP-WC001673-BL-COL-48284BL1"
  56   - "A-WCAP-WC001675-BL-COL-48314BL1"
  57   - "A-WCAP-WC001677-BL-COL-46990BL1"
  58   - "A-WCAP-WC001671-BL-COL-50527BL1"
  59   - "A-WCAP-WC001669-BL-COL-57703BL1"
  60   - "A-WCAP-WC001667-BL-COL-46970BL1"
  61   - "A-WCAP-WC001670-BL-COL-50445BL1"
  62   - "A-WCAP-WC001654-BL-COL-46029BL1"
  63   - "A-WCAP-WC001664-BL-COL-39293BL1"
  64   - "A-WCAP-WC001665-BL-COL-47583BL1"
  65   - "A-WCAP-WC001653-BL-COL-48362BL1"
  66   - "A-WCAP-WC001657-BL-COL-65820BL1"
  67   - "A-WCAP-WC001658-BL-COL-50384BL1"
  68   - "A-WCAP-WC001666-BL-COL-48390BL1"
  69   - "A-WCAP-WC001656-BL-COL-57746BL1"
  70   - "A-WCAP-WC001638-BL-COL-47008BL1"
  71   - "A-WCAP-WC001639-BL-COL-41818BL1"
  72   - "A-WCAP-WC001646-BL-COL-45962BL1"
  73   - "A-WCAP-WC001652-BL-COL-47594BL1"
  74   - "A-WCAP-WC001640-BL-COL-47537BL1"
  75   - "A-WCAP-WC001629-BL-COL-69602BL1"
  76   - "A-WCAP-WC001641-BL-COL-46986BL1"
  77   - "A-WCAP-WC001645-BL-COL-41786BL1"
  78   - "A-WCAP-WC001636-BL-COL-47553BL1"
  79   - "A-WCAP-WC001634-BL-COL-50462BL1"
  80   - "A-WCAP-WC001623-BL-COL-56498BL1"
  81   - "A-WCAP-WC001627-BL-COL-56607BL1"
  82   - "A-WCAP-WC001626-BL-COL-48292BL1"
  83   - "A-WCAP-WC001621-BL-COL-48345BL1"
  84   - "A-WCAP-WC001618-BL-COL-50400BL1"
  85   - "A-WCAP-WC001622-BL-COL-50921BL1"
  86   - "A-WCAP-WC001616-BL-COL-56626BL1"
  87   - "A-WCAP-WC001617-BL-COL-45961BL1"
  88   - "A-WCAP-WC001612-BL-COL-49158BL1"
  89   - "A-WCAP-WC001608-BL-COL-48342BL1"
  90   - "A-WCAP-WC001611-BL-COL-48295BL1"
  91   - "A-WCAP-WC001605-BL-COL-45954BL1"
  92   - "A-WCAP-WC001594-BL-COL-40429BL1"
  93   - "A-WCAP-WC001606-BL-COL-48422BL1"
  94   - "A-WCAP-WC001595-BL-COL-45200BL1"
  95   - "A-WCAP-WC001602-BL-COL-45226BL1"
  96   - "A-WCAP-WC001604-BL-COL-56480BL1"
  97   - "A-WCAP-WC001598-BL-COL-49123BL1"
  98   - "A-WCAP-WC001603-BL-COL-56489BL1"
  99   - "A-WCAP-WC001587-BL-COL-45975BL1"
 100   - "A-WCAP-WC001593-BL-COL-45249BL1"
 101   - "A-WCAP-WC001589-BL-COL-55018BL1"
 102   - "A-WCAP-WC001577-BL-COL-48318BL1"
 103   - "A-WCAP-WC001586-BL-COL-45943BL1"
 104   - "A-WCAP-WC001585-BL-COL-45991BL1"
 105   - "A-WCAP-WC001584-BL-COL-45976BL1"
 106   - "A-WCAP-WC001581-BL-COL-56483BL1"
 107   - "A-WCAP-WC001582-BL-COL-47610BL1"
 108   - "A-WCAP-WC001572-BL-COL-45937BL1"
 109   - "A-WCAP-WC001574-BL-COL-56642BL1"
 110   - "A-WCAP-WC001567-BL-COL-45235BL1"
 111   - "A-WCAP-WC001573-BL-COL-46034BL1"
 112   - "A-WCAP-WC001568-BL-COL-50455BL1"
 113   - "A-WCAP-WC001566-BL-COL-56566BL1"
 114   - "A-WCAP-WC001559-BL-COL-49283BL1"
 115   - "A-WCAP-WC001556-BL-COL-45259BL1"
 116   - "A-WCAP-WC001564-BL-COL-39158BL1"
 117   - "A-WCAP-WC001552-BL-COL-55020BL1"
 118   - "A-WCAP-WC001563-BL-COL-41119BL1"
 119   - "A-WCAP-WC001558-BL-COL-48277BL1"
 120   - "A-WCAP-WC001545-BL-COL-45981BL1"
 121   - "A-WCAP-WC001547-BL-COL-57785BL1"
 122   - "A-WCAP-WC001543-BL-COL-45240BL1"
 123   - "A-WCAP-WC001542-BL-COL-40920BL1"
 124   - "A-WCAP-WC001541-BL-COL-41762BL1"
 125   - "A-WCAP-WC001544-BL-COL-49161BL1"
 126 splitvcfdirs:
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