cwl/gvcf2fasta/yml/gvcf2fasta_nonrefvcf-imputation-wf-A-PRHS-PR000971-BL-COL-47620BL1.yml

   1 # Copyright (C) The Lightning Authors. All rights reserved.
   2 #
   3 # SPDX-License-Identifier: AGPL-3.0
   4
   5 gqcutoff: 20
   6 genomebed:
   7   class: File
   8   location: keep:67b4d7e55e61cef7343f3928af97e197+54/hg38.bed
   9 ref:
  10   class: File
  11   location: keep:ee5b90cf2d5f3573e6d455ab56e15cdf+761/hg38.fa.gz
  12 sampleid: "A-PRHS-PR000971-BL-COL-47620BL1"
  13 vcf:
  14   class: File
  15   location: keep:4cba97691d17f8542116c74ca6c1d89d+2045/A-PRHS-PR000971-BL-COL-47620BL1_vcpa1.1.allchr_g.vcf.gz
  16 chrs: ["chr1","chr2","chr3","chr4","chr5","chr6","chr7","chr8","chr9","chr10","chr11","chr12","chr13","chr14","chr15","chr16","chr17","chr18","chr19","chr20","chr21","chr22", "chrX"]
  17 refsdir:
  18   class: Directory
  19   location: keep:3a1673a2230877bfaf92b50f7376529c+10590
  20 mapsdir:
  21   class: Directory
  22   location: keep:10b1baade985c576a97dfc37d12b953b+1096
  23 panelnocallbed:
  24   class: File
  25   location: keep:f0b387cc686f227748e6d49033c3f2f0+101/HG001_GRCh38_1_22_v4.2.1_benchmark_nocall.bed