cwl/lightning/yml/fasta2numpy-wf-100test.yml

   1 # Copyright (C) The Lightning Authors. All rights reserved.
   2 #
   3 # SPDX-License-Identifier: AGPL-3.0
   4
   5 tagset:
   6   class: File
   7   location: keep:c37923fd267415556962d5c535e9b075+110/tagset.fa.gz
   8 refdir:
   9   class: Directory
  10   location: keep:ee5b90cf2d5f3573e6d455ab56e15cdf+761
  11 batchsize: 1
  12 matchgenome: ""
  13 threads: 10
  14 mergeoutput: "false"
  15 expandregions: 0
  16 phenotypesnofamilydir:
  17   class: Directory
  18   location: keep:9b76b33c948bba77f2bf58f915cff9f4+120
  19 phenotypesdir:
  20   class: Directory
  21   location: keep:8508667def6057f0bbf0ab4f751d8b05+205
  22 trainingsetsize: 0.8
  23 randomseed: 0
  24 pcacomponents: 10
  25 readmeinfo: ["2022-08-23", "called using VCPA1.1 pipeline", "https://workbench.2xpu4.arvadosapi.com/projects/2xpu4-j7d0g-50i3pwf3a16ubbf"]
  26 chrs:
  27   - "chr1"
  28   - "chr2"
  29   - "chr3"
  30   - "chr4"
  31   - "chr5"
  32   - "chr6"
  33   - "chr7"
  34   - "chr8"
  35   - "chr9"
  36   - "chr10"
  37   - "chr11"
  38   - "chr12"
  39   - "chr13"
  40   - "chr14"
  41   - "chr15"
  42   - "chr16"
  43   - "chr17"
  44   - "chr18"
  45   - "chr19"
  46   - "chr20"
  47   - "chr21"
  48   - "chr22"
  49   - "chrX"
  50   - "chrY"
  51 snpeffdatadir:
  52   class: Directory
  53   location: keep:66c966928931de252274772c76f73025+52054
  54 genomeversion: "GRCh38.86"
  55 dbsnp:
  56   class: File
  57   location: keep:a088b297d614e4c63cbb23f8ad404438+12313/00-All.vcf.gz_renamed.bcf
  58 gnomaddir:
  59   class: Directory
  60   location: keep:c6a8fc877e85d73ac5b165e2d7367e26+675135
  61 fastadirs:
  62   - class: Directory
  63     location: keep:7f3ba4ea8d7504ce040da01507c71f6f+138479