1 # Copyright (C) The Lightning Authors. All rights reserved.
3 # SPDX-License-Identifier: AGPL-3.0
7 label: Convert VCF to FASTA with bcftools consensus
20 secondaryFiles: [.tbi]
23 label: Reference FASTA
26 label: Mask BED region where FASTA sequence is filled with 'N'
29 label: Script to run bcftools consensus
32 location: src/bcftools-consensus.sh
40 - $(inputs.bashscript)