cwl/imputation/yml/imputation-A-PRHS-PR000971-BL-COL-47620BL1.yml

   1 # Copyright (C) The Lightning Authors. All rights reserved.
   2 #
   3 # SPDX-License-Identifier: AGPL-3.0
   4
   5 chrs: ["chr1","chr2","chr3","chr4","chr5","chr6","chr7","chr8","chr9","chr10","chr11","chr12","chr13","chr14","chr15","chr16","chr17","chr18","chr19","chr20","chr21","chr22", "chrX"]
   6 sample: "A-PRHS-PR000971-BL-COL-47620BL1"
   7 refsdir:
   8   class: Directory
   9   location: keep:3a1673a2230877bfaf92b50f7376529c+10590
  10 mapsdir:
  11   class: Directory
  12   location: keep:10b1baade985c576a97dfc37d12b953b+1096
  13 vcf:
  14   class: File
  15   location: keep:4bb2da1e66635abad432315cb5c13021+553/A-PRHS-PR000971-BL-COL-47620BL1_varonly.vcf.gz
  16 nocallbed:
  17   class: File
  18   location: keep:4bb2da1e66635abad432315cb5c13021+553/A-PRHS-PR000971-BL-COL-47620BL1_nocall.bed
  19 panelnocallbed:
  20   class: File
  21   location: keep:f0b387cc686f227748e6d49033c3f2f0+101/HG001_GRCh38_1_22_v4.2.1_benchmark_nocall.bed
  22 panelcallbed:
  23   class: File
  24   location: keep:ea4364c48def931b8cdaf07913a3657b+94/HG001_GRCh38_1_22_v4.2.1_benchmark.bed
  25 genomebed:
  26   class: File
  27   location: keep:67b4d7e55e61cef7343f3928af97e197+54/hg38.bed