cwl/lightning/yml/fasta2numpy-multi-wf-0831_0315_ADNI.yml

   1 # Copyright (C) The Lightning Authors. All rights reserved.
   2 #
   3 # SPDX-License-Identifier: AGPL-3.0
   4
   5 tagset:
   6   class: File
   7   location: keep:c37923fd267415556962d5c535e9b075+110/tagset.fa.gz
   8 refdirs:
   9   - class: Directory
  10     location: keep:ee5b90cf2d5f3573e6d455ab56e15cdf+761
  11 batchsize: 12
  12 matchgenome_array: ["ADNI"]
  13 regions_nestedarray:
  14   - - null
  15 threads_array: [10]
  16 mergeoutput_array: ["false"]
  17 expandregions_array: [0]
  18 phenotypesdir:
  19   class: Directory
  20   location: keep:2xpu4-4zz18-yq0njnojx7kaj34
  21 readmeinfo: ["2022-03-22", "called using VCPA1.1 pipeline, ADNI only", "https://workbench.2xpu4.arvadosapi.com/projects/2xpu4-j7d0g-50i3pwf3a16ubbf"]
  22 chrs:
  23   - "chr1"
  24   - "chr2"
  25   - "chr3"
  26   - "chr4"
  27   - "chr5"
  28   - "chr6"
  29   - "chr7"
  30   - "chr8"
  31   - "chr9"
  32   - "chr10"
  33   - "chr11"
  34   - "chr12"
  35   - "chr13"
  36   - "chr14"
  37   - "chr15"
  38   - "chr16"
  39   - "chr17"
  40   - "chr18"
  41   - "chr19"
  42   - "chr20"
  43   - "chr21"
  44   - "chr22"
  45   - "chrX"
  46   - "chrY"
  47 snpeffdatadir:
  48   class: Directory
  49   location: keep:66c966928931de252274772c76f73025+52054
  50 genomeversion_array: ["GRCh38.86"]
  51 dbsnp:
  52   class: File
  53   location: keep:a088b297d614e4c63cbb23f8ad404438+12313/00-All.vcf.gz_renamed.bcf
  54 gnomaddir:
  55   class: Directory
  56   location: keep:c6a8fc877e85d73ac5b165e2d7367e26+675135
  57 fastadirs:
  58   - class: Directory
  59     location: keep:7f3ba4ea8d7504ce040da01507c71f6f+138479
  60   - class: Directory
  61     location: keep:5f4e90fbbdbc9496bc80d68a0ed3c082+138479
  62   - class: Directory
  63     location: keep:6a9d10762c98f71467957995f43a3227+138493
  64   - class: Directory
  65     location: keep:8803e18d1c5d3655e4c65a67fcde261f+138469
  66   - class: Directory
  67     location: keep:e7a60ec6ce207229bb5dd628882b7145+138497
  68   - class: Directory
  69     location: keep:01d219030897f7e1550c5aa5d4df7a35+137556
  70   - class: Directory
  71     location: keep:afbfe6c1d7d751607c47de7dcc3b839e+137959
  72   - class: Directory
  73     location: keep:8eff0f12f4b3c1fdc4332326c2ea6674+137107
  74   - class: Directory
  75     location: keep:64ca59668a2dcf61f351afcf350d42e7+138471
  76   - class: Directory
  77     location: keep:62d89d039fad7221f16c34b722e097af+138465
  78   - class: Directory
  79     location: keep:5a71084d1947ce8f9454b4b2e0796b41+138503
  80   - class: Directory
  81     location: keep:69c4e14981608d6be9aeaf6da94aebfb+138459
  82   - class: Directory
  83     location: keep:0eaa03f63440c825bc722022eac85448+138463
  84   - class: Directory
  85     location: keep:e167599ed16c7b1f7bff217fc5d80a4b+138457
  86   - class: Directory
  87     location: keep:cbf21c73503b4cb792b5231c46358ba3+138523
  88   - class: Directory
  89     location: keep:11683cd5f820ff9d42d3888bbb00221f+138205
  90   - class: Directory
  91     location: keep:8b09dae12292f375aa98de6f36be53c2+138491
  92   - class: Directory
  93     location: keep:8d02abcdef3e1b3ab910303df4331399+137649
  94   - class: Directory
  95     location: keep:c3884ba793bf5771ba7267246f747893+138479
  96   - class: Directory
  97     location: keep:e96460313d37f2e7d0aa647d3b88f6f8+138479
  98   - class: Directory
  99     location: keep:fa72acb0219d6833f90beb1e3874e485+138481
 100   - class: Directory
 101     location: keep:01e5edc00295926a91351e8069cb144f+138477
 102   - class: Directory
 103     location: keep:bf076ef6270cf0f2cf3c6aaa79893cc8+138048
 104   - class: Directory
 105     location: keep:66d688c08060cd9750fb6e46cce3fa39+138479
 106   - class: Directory
 107     location: keep:9c78e31f255406bee37d8960ce79c185+138471
 108   - class: Directory
 109     location: keep:100591a332d9f256842f086fa92177dc+138735
 110   - class: Directory
 111     location: keep:ef10e9c7591c5466d5791666f830bf06+138725
 112   - class: Directory
 113     location: keep:8b42e879ae88a25fb4ca5888abea9c38+138687
 114   - class: Directory
 115     location: keep:ffa0d2888d14b2940562801bc163d4b2+138667
 116   - class: Directory
 117     location: keep:98854a1e4db58922e5e712507217e2b5+138483
 118   - class: Directory
 119     location: keep:f72b41e5d5cb7dbb4171eac06f86f6a1+138479
 120   - class: Directory
 121     location: keep:381b930fc4059b819bda2c414927deaf+138477
 122   - class: Directory
 123     location: keep:558b093245095d1029f4cbe1f2726e99+138056
 124   - class: Directory
 125     location: keep:0f937cc7f4e6f8b47d80e28f0a99bc8a+138479
 126   - class: Directory
 127     location: keep:95aba9cd1cce2de6fbc6c5851c81387d+138479
 128   - class: Directory
 129     location: keep:94328ab7b661267810f9f0197eae70da+138479
 130   - class: Directory
 131     location: keep:666124ae8a9a6734bba5de48490748c0+138479
 132   - class: Directory
 133     location: keep:98359aa9baa931eea204298f7b26563c+138479
 134   - class: Directory
 135     location: keep:c061711a7b7e7d8acddfde36e785cc77+138479
 136   - class: Directory
 137     location: keep:ac21ed8a0e6af91debc39ddee1197787+138503
 138   - class: Directory
 139     location: keep:41ab49b22d2f4ed90fa4f446ef7fbb8d+138357
 140   - class: Directory
 141     location: keep:0e6d1ff3738abd240efaca9079f62f46+138851
 142   - class: Directory
 143     location: keep:ed82b93d0ca76ffd666457399c2462cd+138101
 144   - class: Directory
 145     location: keep:7efb683d9556c87c69fb1cbbaa290820+137674
 146   - class: Directory
 147     location: keep:377b8665f04091581e560614ba20ca46+138515
 148   - class: Directory
 149     location: keep:da7207cc977b12f60372b742785eec62+138491
 150   - class: Directory
 151     location: keep:54403688627695480b373eb354dc1c7f+138479
 152   - class: Directory
 153     location: keep:dff90a9f9feaa5ed1e7c86f1e79926cc+138489
 154   - class: Directory
 155     location: keep:f82c35228c761a1e0f3ec9f5687efddd+137093
 156   - class: Directory
 157     location: keep:661cd8f54deabacb49ec78db93ed4578+138479
 158   - class: Directory
 159     location: keep:b326e6b7773354041b03dfe4564ffd0b+137095
 160   - class: Directory
 161     location: keep:853632bf7879231f9ac24096e52f95e1+138479
 162   - class: Directory
 163     location: keep:f190f2167bcd4fe819878efcde43e6f0+138059
 164   - class: Directory
 165     location: keep:51f70f5861f61aca2e441e2c5d282150+138479
 166   - class: Directory
 167     location: keep:6b4ecc7f949c824f6e2c99ccd8450238+138479
 168   - class: Directory
 169     location: keep:11ca0c4ee2a4409c6f43470515c897fd+138479
 170   - class: Directory
 171     location: keep:9f89f0c88e2b709af225e8ba2f8bff8d+138477
 172   - class: Directory
 173     location: keep:e8f37c72e41dcc35f02d4fbe5da08a8b+138485
 174   - class: Directory
 175     location: keep:1bbc537e0b7ac50e1e9ec5fe12c5bb2e+138580
 176   - class: Directory
 177     location: keep:f0322067b85babcae2ecdd19d34f7597+138478
 178   - class: Directory
 179     location: keep:47aa083e8d0a6c4c297d036165902282+138478
 180   - class: Directory
 181     location: keep:9f9d01fd058a06f30955f6b9709194fb+138531
 182   - class: Directory
 183     location: keep:f382e81786847d7395684e858786fc62+138479
 184   - class: Directory
 185     location: keep:42b9f228c66a1bb26f37f6751f4f125f+138479
 186   - class: Directory
 187     location: keep:abfec28b755a4826f3e58703dbbd1ac9+138059
 188   - class: Directory
 189     location: keep:6346d82f0746faee45f5ba194dd25d0b+138479
 190   - class: Directory
 191     location: keep:046da89ef991cc019f5092c326e2b8f8+138479
 192   - class: Directory
 193     location: keep:52bdef8f26c69eb338d5d94b08cce125+138479
 194   - class: Directory
 195     location: keep:4e0dbaba2b52fd93cb2c279415186a7b+138599
 196   - class: Directory
 197     location: keep:fa21ef0cd50701250a927b4993df53e7+138297
 198   - class: Directory
 199     location: keep:a333d969b2b84dfe7a2abb5889763c26+138675
 200   - class: Directory
 201     location: keep:5fcb253d3584035246f5b4bcd60fa348+137291
 202   - class: Directory
 203     location: keep:8a73aff41e5b603adddcf1eefe2e15e9+137209
 204   - class: Directory
 205     location: keep:e77aefd6c8f51abcf404e482a9b06b0d+134402
 206   - class: Directory
 207     location: keep:6ae72d55cf26d4afa12dab3970e0bf59+136783
 208   - class: Directory
 209     location: keep:b029a9d42e085a45a2ce1840d0961eb7+137879
 210   - class: Directory
 211     location: keep:41cd1f1511d617ec6e4bfb42db64be03+138187
 212   - class: Directory
 213     location: keep:55ad863fef7d8dccf4db32f282f752c4+135119
 214   - class: Directory
 215     location: keep:30e016d511a2443985d2b051638a419b+138047
 216   - class: Directory
 217     location: keep:2711053e417e15034cae0c8aec568a45+138352
 218   - class: Directory
 219     location: keep:020cddfa8082c5476c011aaa189cf518+138479
 220   - class: Directory
 221     location: keep:5bb2df76b0869bea8833784a934f7021+138479
 222   - class: Directory
 223     location: keep:112983eafc025aaeb54d81cf01ce3a4e+138479
 224   - class: Directory
 225     location: keep:6e1bf98f088ced1ef8b60f562374325b+138479
 226   - class: Directory
 227     location: keep:153d189544f36dd39610087a782589ca+138479
 228   - class: Directory
 229     location: keep:ff71aa46f8f4134f1556d4b19d0b9307+138058
 230   - class: Directory
 231     location: keep:e996083281665242208b0773b0d6287c+138058
 232   - class: Directory
 233     location: keep:3f2d1ab2f1fa98341ddab5b3cc53ec2e+138479
 234   - class: Directory
 235     location: keep:abbcfbc8fc06988a2b0d94b0c443e459+138479
 236   - class: Directory
 237     location: keep:7e6f8a9c9244ea7c6e3341d1b5aa6b32+138479
 238   - class: Directory
 239     location: keep:e08ebbc428bc0604e07f72b21410ce58+138479
 240   - class: Directory
 241     location: keep:e2367de25b3dffcb1ac1aa7373b7a283+138479
 242   - class: Directory
 243     location: keep:f4318c61400198c3d44895e184e79b4c+138479
 244   - class: Directory
 245     location: keep:5a0d263b7469871268e31919899e6103+138445
 246   - class: Directory
 247     location: keep:0c5a32dc706c195619b3f84bac5d3978+136353
 248   - class: Directory
 249     location: keep:3843ae092703f6696cb5f42f464f4583+134452
 250   - class: Directory
 251     location: keep:745d1dec2cfeb0f28f3eaf9dedd6a962+136783
 252   - class: Directory
 253     location: keep:570f09f532cbd74146bd8ba3cc363263+137749
 254   - class: Directory
 255     location: keep:ec659571f3a78e63e457797fc58f1828+137677
 256   - class: Directory
 257     location: keep:60da5cf26a882d1b4e024326cd7d893b+130004
 258   - class: Directory
 259     location: keep:13f6862e9770f63bd44b6ef539541dc3+138079
 260   - class: Directory
 261     location: keep:83fb84b000e58c16fe17adef5de277b1+138079
 262   - class: Directory
 263     location: keep:2865b8e5e49decb8b65b42ae060bcc96+138079
 264   - class: Directory
 265     location: keep:fc49628c14a44abf3e54c4a956aa5888+136845
 266   - class: Directory
 267     location: keep:6c52a3c5f4bc152851ad9cdcacaabf23+138089
 268   - class: Directory
 269     location: keep:c08e22c6705b07111205c0edc2c3872d+136586
 270   - class: Directory
 271     location: keep:c577425ff9f3a0d886f3426065a72ca4+137691
 272   - class: Directory
 273     location: keep:ddf235932a0e2176593aac5a4ac42861+136337
 274   - class: Directory
 275     location: keep:aa28a7e5d5657abbd0134e66cf6a89a5+133731
 276   - class: Directory
 277     location: keep:49b91c25d606fd2fa451d2b7c92193a8+137879
 278   - class: Directory
 279     location: keep:838fd46abf759e68bdc17f29d1680752+138063
 280   - class: Directory
 281     location: keep:a1391969d1b8e92d8c98ed4ad8fad8ed+136665
 282   - class: Directory
 283     location: keep:3dfbeda6c564f9f275f74c694022b52d+135167
 284   - class: Directory
 285     location: keep:94de36359231b01ef2e277083bfe5287+137677
 286   - class: Directory
 287     location: keep:2370e1db54c8e0e4b2d314c4a7984304+137845
 288   - class: Directory
 289     location: keep:aa76e46ce3409c0cccb96fe9f7ad960a+138170
 290   - class: Directory
 291     location: keep:5bb1f2fcb9961e0c0aa7159cabdd2fd3+137678
 292   - class: Directory
 293     location: keep:807a04e5c2d91d5f454323b6fc9e035d+137679
 294   - class: Directory
 295     location: keep:368d3f71ad4e0822a3bac8abe67ed536+133665
 296   - class: Directory
 297     location: keep:0d5b719030ae9bffbfbcd2c0855c66c7+128362
 298   - class: Directory
 299     location: keep:2c08aca1b2c0537e0d153a21dc0561f8+136859
 300   - class: Directory
 301     location: keep:9acd969c8b08cedce1fd8d769d214b75+137559
 302   - class: Directory
 303     location: keep:e27d19c6a505cd01eea3f0a13ba46a83+137977
 304   - class: Directory
 305     location: keep:127cc72a3bd0953bb19e05b83f5190d0+26161
 306   - class: Directory
 307     location: keep:fd615aa5b1fcf7f2695c4ec8f5b9351a+55569
 308   - class: Directory
 309     location: keep:dfed457efee3414f1c1f7536fe83eed3+109552
 310   - class: Directory
 311     location: keep:14388f62c868254149d5972c7d80d28d+97366
 312   - class: Directory
 313     location: keep:5e99d1ef6b90001e01450ffe093e9493+135278
 314   - class: Directory
 315     location: keep:153533e237092985535d7f9b0a4a354e+135278
 316   - class: Directory
 317     location: keep:1a0d1ede9fcabaabce592c86bec88db0+135278
 318   - class: Directory
 319     location: keep:281ec2620a88b7274b44ece0ca96b543+135278
 320   - class: Directory
 321     location: keep:9d2dfc3510b82e5249045e71862a44d9+135278
 322   - class: Directory
 323     location: keep:a3191cb63a48307e9cd97cc6de42d83c+135194
 324   - class: Directory
 325     location: keep:d80d9356d64396465ca61585b4c3031b+135419
 326   - class: Directory
 327     location: keep:881e67efac709867dafc480116c2edf1+138479
 328   - class: Directory
 329     location: keep:5ffe1b2bcdb75190b228d8e7117baaa0+138479
 330   - class: Directory
 331     location: keep:6a671736ca4bf130e3ab507b702024bc+136672
 332   - class: Directory
 333     location: keep:504c77a1298ff2649af35527dec8b467+138058
 334   - class: Directory
 335     location: keep:e19f2c238e685f62f52c58eb4c44d703+134867
 336   - class: Directory
 337     location: keep:afad6e6fd6933d8919a4a39712e80afe+67509
 338   - class: Directory
 339     location: keep:09771439ce1431d168b15bb36cc8cacb+136998
 340   - class: Directory
 341     location: keep:cb3b59ec7468d27ef643380568f945e4+138679
 342   - class: Directory
 343     location: keep:b3ec1453c963d0b5c36134bd3e7c97dc+138679
 344   - class: Directory
 345     location: keep:52d413d47ebc5abaeda098254ce6d517+138629
 346   - class: Directory
 347     location: keep:43e6437a5dc4d833ed2e167b42b9430a+138059
 348   - class: Directory
 349     location: keep:d081f62909038dd25c499972547ced53+138479
 350   - class: Directory
 351     location: keep:bcd3a181bcb601c1e57f7cb7eeb4d270+137975
 352   - class: Directory
 353     location: keep:9882f01b1cc6172959a3efab49d89397+78041