cwl/lightning/make-fastadirs.cwl

   1 # Copyright (C) The Lightning Authors. All rights reserved.
   2 #
   3 # SPDX-License-Identifier: AGPL-3.0
   4
   5 cwlVersion: v1.2
   6 class: ExpressionTool
   7 requirements:
   8   InlineJavascriptRequirement: {}
   9 hints:
  10   LoadListingRequirement:
  11     loadListing: shallow_listing
  12 inputs:
  13   fas:
  14     type:
  15       type: array
  16       items:
  17         type: array
  18         items: File
  19 outputs:
  20   fastadirs: Directory[]
  21 expression: |
  22   ${
  23     var fastadirs = [];
  24     for (var i = 0; i < inputs.fas.length; i+=100) {
  25       var fastadir = {"class": "Directory",
  26                       "basename": "dir"+String(i/100),
  27                       "listing": []};
  28       for (var j = i; j < Math.min(i+100, inputs.fas.length); j+=1) {
  29         fastadir.listing.push(inputs.fas[j][0]);
  30         fastadir.listing.push(inputs.fas[j][1]);
  31       }
  32       fastadirs.push(fastadir);
  33     }
  34     return {"fastadirs": fastadirs};
  35   }