projects
/
arvados.git
/ tree
summary
|
shortlog
|
log
|
commit
|
commitdiff
| tree
history
|
HEAD
|
snapshot
closes #9552
[arvados.git]
/
crunch_scripts
/
drwxr-xr-x
..
-rwxr-xr-x
2031
GATK2-VariantFiltration
blob
|
history
|
raw
-rwxr-xr-x
2836
GATK2-bqsr
blob
|
history
|
raw
-rwxr-xr-x
7379
GATK2-merge-call
blob
|
history
|
raw
-rwxr-xr-x
5216
GATK2-realign
blob
|
history
|
raw
-rwxr-xr-x
5699
arvados-bcbio-nextgen.py
blob
|
history
|
raw
-rw-r--r--
3744
arvados_bwa.py
blob
|
history
|
raw
-rw-r--r--
1643
arvados_gatk2.py
blob
|
history
|
raw
-rw-r--r--
1504
arvados_ipc.py
blob
|
history
|
raw
-rw-r--r--
1372
arvados_picard.py
blob
|
history
|
raw
-rw-r--r--
3664
arvados_samtools.py
blob
|
history
|
raw
-rwxr-xr-x
3935
bwa-aln
blob
|
history
|
raw
-rwxr-xr-x
1197
bwa-index
blob
|
history
|
raw
-rwxr-xr-x
1202
collection-merge
blob
|
history
|
raw
-rwxr-xr-x
157
crunchrunner
blob
|
history
|
raw
drwxr-xr-x
-
crunchutil
tree
|
history
-rwxr-xr-x
3671
cwl-runner
blob
|
history
|
raw
-rwxr-xr-x
1764
decompress-all.py
blob
|
history
|
raw
-rwxr-xr-x
420
file-select
blob
|
history
|
raw
-rwxr-xr-x
655
grep
blob
|
history
|
raw
-rwxr-xr-x
1012
hash
blob
|
history
|
raw
-rwxr-xr-x
4763
pgp-survey-import
blob
|
history
|
raw
-rwxr-xr-x
530
pgp-survey-parse
blob
|
history
|
raw
-rwxr-xr-x
6761
picard-gatk2-prep
blob
|
history
|
raw
-rw-r--r--
2427
pyrtg.py
blob
|
history
|
raw
-rwxr-xr-x
733
rtg-fasta2sdf
blob
|
history
|
raw
-rwxr-xr-x
1434
rtg-fastq2sdf
blob
|
history
|
raw
-rwxr-xr-x
1155
rtg-map
blob
|
history
|
raw
-rwxr-xr-x
988
rtg-snp
blob
|
history
|
raw
-rwxr-xr-x
16176
run-command
blob
|
history
|
raw
-rwxr-xr-x
2020
split-fastq.py
blob
|
history
|
raw
drwxr-xr-x
-
test
tree
|
history